Align Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 (characterized)
to candidate GFF2752 HP15_2696 phenylacetate-CoA ligase
Query= SwissProt::O33469 (439 letters) >FitnessBrowser__Marino:GFF2752 Length = 436 Score = 642 bits (1657), Expect = 0.0 Identities = 316/425 (74%), Positives = 357/425 (84%), Gaps = 1/425 (0%) Query: 12 LDPMETASVDALRQHQLERLRWSLKHAYDNVPLYRQRFAECGAHPDDLTCLEDLAKFPFT 71 LD METAS+D LR QL+RLRWS+ HAY NVP YR+ F + G P D+ LEDLAK PFT Sbjct: 11 LDRMETASIDELRHEQLQRLRWSVVHAYTNVPFYRKAFDDQGLKPMDINSLEDLAKVPFT 70 Query: 72 GKNDLRDNYPYGMFAVPQEEVVRLHASSGTTGKPTVVGYTQNDINTWANVVARSIRAAGG 131 K DLRDNYP+GMFA P +VVR+HASSGTTGKPTVVGYTQ+DINTWA++VARSIRA GG Sbjct: 71 TKADLRDNYPFGMFATPMSDVVRVHASSGTTGKPTVVGYTQSDINTWADIVARSIRAGGG 130 Query: 132 RKGDKVHVSYGYGLFTGGLGAHYGAERLGCTVIPMSGGQTEKQVQLIRDFQPDIIMVTPS 191 +GDKVHV+YGYGLFTGGLGAHYGAERLGCTVIPMSGGQTEKQVQLI+DF+PDIIMVTPS Sbjct: 131 SRGDKVHVAYGYGLFTGGLGAHYGAERLGCTVIPMSGGQTEKQVQLIKDFEPDIIMVTPS 190 Query: 192 YMLNLADEIERQGIDPHDLKLRLGIFGAEPWTDELRRSIEQRLGINALDIYGLSEIMGPG 251 YMLN+ADE+ERQGIDPH L LRLGIFGAEPWT+ +R IE+RLGI ALDIYGLSE+MGPG Sbjct: 191 YMLNIADEMERQGIDPHKLPLRLGIFGAEPWTNAMRSEIEERLGIEALDIYGLSEVMGPG 250 Query: 252 VAMECIETKDGPTIWEDHFYPEIIDPVTGEVLPDGQLGELVFTSLSKEALPMVRYRTRDL 311 V MECIETKDGPTIWEDHFYPEII+P TGEVLPDG+ GELVFTSL+K ALP++RYRTRDL Sbjct: 251 VGMECIETKDGPTIWEDHFYPEIINPETGEVLPDGEYGELVFTSLTKVALPILRYRTRDL 310 Query: 312 TRLLPGTARPMRRIGKITGRSDDMLIIRGVNVFPTQIEEQVLKIKQLSEMYEIHLYRNGN 371 TRLLPGTARPMRRI KITGRSDDMLIIRGVNVFP+QIEEQVLK + L+ YEI +Y+ GN Sbjct: 311 TRLLPGTARPMRRIDKITGRSDDMLIIRGVNVFPSQIEEQVLKCEALAPHYEIEVYKEGN 370 Query: 372 LDSVEVHVELRAECQHLDEGQRKLVIGELSKQIKTYIGISTQVHLQACGTLKRSEGKACH 431 LD V++ EL+ E R EL+ IK+YIGIST+V + L RSEGKA Sbjct: 371 LDCVDIRTELKPGVTDTPE-SRAAAAKELAHHIKSYIGISTRVEVVETNRLARSEGKAKR 429 Query: 432 VYDKR 436 V+D+R Sbjct: 430 VFDRR 434 Lambda K H 0.320 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 723 Number of extensions: 24 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 439 Length of database: 436 Length adjustment: 32 Effective length of query: 407 Effective length of database: 404 Effective search space: 164428 Effective search space used: 164428 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate GFF2752 HP15_2696 (phenylacetate-CoA ligase)
to HMM TIGR02155 (paaF: phenylacetate-CoA ligase (EC 6.2.1.30))
../bin/blast/fastacmd -i /tmp/list.19051.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19051.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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