Align acetoacetate-CoA ligase (EC 6.2.1.16) (characterized)
to candidate GFF4237 HP15_4177 acetyl-CoA synthetase
Query= BRENDA::D6EQU8 (658 letters) >FitnessBrowser__Marino:GFF4237 Length = 662 Score = 561 bits (1445), Expect = e-164 Identities = 283/653 (43%), Positives = 407/653 (62%), Gaps = 15/653 (2%) Query: 2 STENPQPLWQPDAQRIAQARITRFQAWAAEHHGAPAEGGYAALHRWSVDELDTFWKAVTE 61 +T +P LW P + +R+ +F+AW E G Y AL++WS+DEL+TFW+ V + Sbjct: 5 TTPSPDILWSPSEDTLKNSRMGQFKAWL-EQQGLGPFTDYHALYQWSIDELETFWQKVWD 63 Query: 62 WFDVRFSTPYARVLGDRTMPGAQWFPGATLNYAEHALRAA-GTRPDEPALLYVDETHEPA 120 + + TP +VLG R MPGA+WFPG LN+A + LR A G D+ A++ ET Sbjct: 64 YCGLVCDTPAEKVLGKRDMPGAEWFPGMKLNFAANLLRLADGEHADQEAVVAYCETRPVL 123 Query: 121 PVTWAELRRQVASLAAELRALGVRPGDRVSGYLPNIPQAVVALLATAAVGGVWTSCAPDF 180 T+A+L+ +L A LR G++ GDRV+G + N +A+V +LA ++G +W+S +PDF Sbjct: 124 RRTYAQLKADAGALEAFLRDKGIQQGDRVAGVVTNGYEALVGMLAATSMGAIWSSASPDF 183 Query: 181 GARSVLDRFQQVEPVVLFTVDGYRYGGKEHDRRDTVAELRRELPTLRAVIHIPLLGTEAP 240 G ++LDRF Q+EP L V+GY YGGK R+ AEL LPTL++V+ + L E P Sbjct: 184 GIGAILDRFGQIEPAALIVVNGYGYGGKVFARQQDFAELIAGLPTLKSVVSVQQLPDEPP 243 Query: 241 -DGTL--DWETLTAADA--EPVYEQVPFDHPLWVLYSSGTTGLPKAIVQSQGGILVEHLK 295 G L WE + A P + +P DHP+++LYSSGTTG PK IV G+LV H K Sbjct: 244 IAGNLVTTWEDMLAYGKGNAPSFTPLPPDHPVYILYSSGTTGKPKCIVHGNAGLLVNHAK 303 Query: 296 QLGLHCDLGPGDRFFWYTSTGWMMWNFLVSGLLTGTTIVLYDGSPGFPATDAQWRIAERT 355 +L LH D+GP DRF ++T+ GWMMWN+ S L+TG ++ DGSPG+P+ + W Sbjct: 304 ELMLHGDVGPEDRFLYFTTCGWMMWNWQASALMTGAAVITVDGSPGYPSLNFLWDTVAEE 363 Query: 356 GATLFGTSAAYVMACRKAGVHPARDLDLSAIQCVATTGSPLPPDGFRWLHDEFAAGGADL 415 T FGTSA ++ CRK + PA+ LD S ++ V +TGSPL P+ + W++ + G D Sbjct: 364 KVTHFGTSARFIAGCRKGELKPAKTLDQSKLRVVFSTGSPLLPEDYDWVYSD---GAPDA 420 Query: 416 WIASVSGGTDVCSCFAGAVPTLPVHIGELQAPGLGTDLQSWDPSGDPLTDEVGELVVTNP 475 + S++GGTD+C CF G+ P LPV GE+Q LG D ++ G P+++ GELV P Sbjct: 421 LLGSIAGGTDICGCFVGSTPLLPVRRGEIQCRFLGVDAVAYGDDGQPVSEGRGELVCRQP 480 Query: 476 MPSMPIRFWNDPDGSRYHDSYFDTYPGVWRHGDWITLTSRGSVVIHGRSDSTLNRQGVRM 535 +PSMP+ FW DP RY D+YF+T+PGVW HGD+I T G +I+GRSD+TLN GVR+ Sbjct: 481 LPSMPVSFWQDPGDERYKDAYFNTFPGVWAHGDFIEFTEHGGAIIYGRSDATLNPGGVRI 540 Query: 536 GSADIYEAVERLPEIRESLVIGIEQPDGGYWMPLFVHLAPGATLDDALLDRIKRTIRVNL 595 G+A+IY VE + E+++SLV+G Q DG + L V A G + + LL ++K IR Sbjct: 541 GTAEIYRQVETVAEVKDSLVVG-RQIDGDVEVVLLVVPAAGQEITNDLLKQLKSRIREGA 599 Query: 596 SPRHVPDEVIEVPGIPHTLTGKRIEVPVKRLLQGTP----LDKAVNPGSIDNL 644 SPRHVP +++V IP+T +GK++E+ V RL+ G+ D NP ++D + Sbjct: 600 SPRHVPKRIVQVNDIPYTRSGKKVELAVARLINGSKKSDNRDALSNPEALDEI 652 Lambda K H 0.320 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1418 Number of extensions: 69 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 658 Length of database: 662 Length adjustment: 38 Effective length of query: 620 Effective length of database: 624 Effective search space: 386880 Effective search space used: 386880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.4 bits)
Align candidate GFF4237 HP15_4177 (acetyl-CoA synthetase)
to HMM TIGR01217 (acetoacetate-CoA ligase (EC 6.2.1.16))
../bin/blast/fastacmd -i /tmp/list.756.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.756.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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