Align Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 (characterized)
to candidate GFF1973 HP15_1930 aconitate hydratase 1
Query= SwissProt::Q937N8 (869 letters) >FitnessBrowser__Marino:GFF1973 Length = 865 Score = 1387 bits (3590), Expect = 0.0 Identities = 692/869 (79%), Positives = 757/869 (87%), Gaps = 7/869 (0%) Query: 1 MNSANRKPLPGTKLDYFDARAAVEAIQPGAYDKLPYTSRVLAENLVRRCDPATLTDSLLQ 60 MN+ RK LPGT LDYFD R AVE IQ GAYDKLPYTS++LAE LVRRCDP LTDSL Q Sbjct: 1 MNTEYRKSLPGTDLDYFDTRQAVEDIQAGAYDKLPYTSKILAEQLVRRCDPEVLTDSLKQ 60 Query: 61 LVGRKRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIADQGGDPAKVNPVVPVQLIVDH 120 L+ RKRDLDFPW+PARVVCHDILGQTALVDLAGLRDAIA++GGDPAKVNPVVP QLIVDH Sbjct: 61 LIERKRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAKVNPVVPTQLIVDH 120 Query: 121 SLAVECGGFDPDAFAKNRAIEDRRNEDRFHFIDWTKQAFKNVDVIPPGNGIMHQINLEKM 180 SLAVE GF+ DAF KNR IEDRRN+DRFHFI+WTK AFKNVDVIPPGNGIMHQINLEKM Sbjct: 121 SLAVEHAGFEKDAFEKNREIEDRRNDDRFHFINWTKTAFKNVDVIPPGNGIMHQINLEKM 180 Query: 181 SPVIHADNGVAYPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIVGV 240 SPV+ +GVA+PDTCVGTDSHTP VDALGVI++GVGGLEAE+VMLGRAS MRLPDIVGV Sbjct: 181 SPVVQNRDGVAFPDTCVGTDSHTPMVDALGVISVGVGGLEAESVMLGRASMMRLPDIVGV 240 Query: 241 ELTGKRQPGITATDIVLALTEFLRKEKVVGAYLEFRGEGASSLTLGDRATISNMAPEYGA 300 ELTGK QPGIT+TD+VLA+TEFLRKEKVVGAYLEF GEGA SL++GDRATISNM PEYGA Sbjct: 241 ELTGKLQPGITSTDMVLAITEFLRKEKVVGAYLEFYGEGADSLSVGDRATISNMTPEYGA 300 Query: 301 TAAMFFIDEQTIDYLRLTGRTDEQLKLVETYARTAGLWADSLKNAEYERVLKFDLSSVVR 360 TAAMF+ID QTIDYL+LTGR D+Q+ LVE +A+ GLWADS+KNAEYERVLKFDLS V R Sbjct: 301 TAAMFYIDGQTIDYLKLTGREDDQVALVEKFAKETGLWADSMKNAEYERVLKFDLSKVTR 360 Query: 361 NMAGPSNPHKRLPTSALAERGIAVDLDKASAQEAEGLMPDGAVIIAAITSCTNTSNPRNV 420 +AGPSNPH LPTS LA RGIA ++ EG MPDGA IIAAITSCTNTSNPRN+ Sbjct: 361 TLAGPSNPHAHLPTSELAARGIA-----GEWEQEEGKMPDGACIIAAITSCTNTSNPRNM 415 Query: 421 IAAALLARNANARGLARKPWVKSSLAPGSKAVELYLEEANLLPDLEKLGFGIVAFACTTC 480 +AA L+ARNAN GL RKPWVK+SLAPGSK V++YLEEA LLP+LE+LGFG+VAFACTTC Sbjct: 416 VAAGLIARNANKLGLTRKPWVKTSLAPGSKTVKMYLEEAKLLPELEQLGFGVVAFACTTC 475 Query: 481 NGMSGALDPKIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI 540 NGMSGALDPKI QEI+DRDL++TAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI Sbjct: 476 NGMSGALDPKIAQEIMDRDLFSTAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI 535 Query: 541 RFDIEKDVLGTDQDGKPVYLKDIWPSDEEIDAIVAKSVKPEQFRKVYEPMFAITAASGES 600 RFDIEKD LG DQDG PV LKDIWP D EIDAIV SVKPEQFR Y PMF IT + + Sbjct: 536 RFDIEKDALGYDQDGNPVTLKDIWPDDAEIDAIVKSSVKPEQFRSTYIPMFDITRDAQAN 595 Query: 601 VSPLYDWRPQSTYIRRPPYWEGALAGERTLKALRPLAVLGDNITTDHLSPSNAIMLNSAA 660 +PLY WRPQSTYIRRPPYWEG + GE+TLK +RPLAVL DNITTDHLSPSNAIM+NSAA Sbjct: 596 TNPLYKWRPQSTYIRRPPYWEGGMVGEKTLKGMRPLAVLPDNITTDHLSPSNAIMMNSAA 655 Query: 661 GEYLARMGLPEEDFNSYATHRGDHLTAQRATFANPTLINEMA-VVDGQVKKGSLARIEPE 719 GEYL +MG+PEEDFNSYATHRGDHLTAQRATFANP L NEM +G VK+GSLARIEPE Sbjct: 656 GEYLHKMGVPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVRDENGNVKQGSLARIEPE 715 Query: 720 GKVVRMWEAIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEVIVAEGFERIHRT 779 GKVVRMWEAIETYM+RKQPLIIIAGADYGQGSSRDWAAKGV LAGVE IVAEGFERIHRT Sbjct: 716 GKVVRMWEAIETYMERKQPLIIIAGADYGQGSSRDWAAKGVALAGVEAIVAEGFERIHRT 775 Query: 780 NLIGMGVLPLEFKPGVNRLTLGLDGTETYDVIGERQPRATLTLVVNRKNGERVEVPVTCR 839 NLIGMGV+PL+F+ G R TLG+DGTETYDV G PRA LTLV++RKNG +PV CR Sbjct: 776 NLIGMGVMPLQFEEGTTRKTLGIDGTETYDVEGTPAPRAELTLVIHRKNGSTERIPVVCR 835 Query: 840 LDSDEEVSIYEAGGVL-HFAQDFLESSRA 867 LD+ EEVSIY AGGVL FA+DFL+S A Sbjct: 836 LDTAEEVSIYSAGGVLQRFAEDFLQSEGA 864 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2137 Number of extensions: 83 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 869 Length of database: 865 Length adjustment: 42 Effective length of query: 827 Effective length of database: 823 Effective search space: 680621 Effective search space used: 680621 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)
Align candidate GFF1973 HP15_1930 (aconitate hydratase 1)
to HMM TIGR02333 (acnD: 2-methylisocitrate dehydratase, Fe/S-dependent (EC 4.2.1.99))
../bin/blast/fastacmd -i /tmp/list.18587.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18587.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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