Align 1-phosphofructokinase (EC 2.7.1.56) (characterized)
to candidate GFF3782 HP15_3724 1-phosphofructokinase
Query= reanno::psRCH2:GFF3290 (312 letters) >FitnessBrowser__Marino:GFF3782 Length = 321 Score = 271 bits (694), Expect = 1e-77 Identities = 147/309 (47%), Positives = 189/309 (61%) Query: 1 MARVLTVTLNPALDLTVQLPALRLGEVNRSDSLQVHAAGKGLNVAQVLADLGHQLTVTGF 60 MAR+LT+TLNPALDL+V+ L LGEVNR+ + AGKG+NVA+VLA LGH +TV G Sbjct: 1 MARILTITLNPALDLSVETAPLALGEVNRTGHTLMEPAGKGINVARVLARLGHSVTVAGL 60 Query: 61 LGEGNPQAFEQLFSARGFTDEFVRVAGETRSNLKLAEADGRVTDINGPGLAVSEAQRAEL 120 LG+ N FE+LF A G D FVRV G+ R+N+K+AEA GRVTD+NGPG E L Sbjct: 61 LGDANAAPFERLFEAEGLQDSFVRVPGQNRNNIKIAEAGGRVTDLNGPGFRAPEDALQRL 120 Query: 121 LARLKRLVPAHELVVVAGSLPRGIDSQWFVQLLNSLKALGVRVALDTSGAALRDGLATRP 180 RLK L+P + VV+ GSLP G L+ V LDTSGA L+ G+ P Sbjct: 121 QLRLKSLLPECDAVVIGGSLPDGFPPSGLAILVEQASRADKPVWLDTSGAGLKAGIKAGP 180 Query: 181 WLIKPNEEELAEARGIELSGSSALAAEAQRLQEEGIEHVVVSQGADGVSWFSPGAALHAS 240 + IKPN +EL++ G L +++AA ++ G+ HVVVS GADGV W SP L + Sbjct: 181 YAIKPNTDELSDWAGTPLKDLASVAATVDGIRAGGVSHVVVSMGADGVFWSSPAGILRSR 240 Query: 241 PPKVRVVSTVGAGDSLLAGMLHGLLEGWPAERTLTHATAIAAQAVGQVGFGITDTAQLAE 300 P V +VSTV AGD+LLAGMLHG+L + L ATA++A+ V +G G Sbjct: 241 VPPVSLVSTVCAGDTLLAGMLHGVLGEQSEDTVLAFATALSAECVQHIGVGDPGAPDFHS 300 Query: 301 LQAAVRLQP 309 L R+QP Sbjct: 301 LLQQTRVQP 309 Lambda K H 0.316 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 292 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 312 Length of database: 321 Length adjustment: 27 Effective length of query: 285 Effective length of database: 294 Effective search space: 83790 Effective search space used: 83790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate GFF3782 HP15_3724 (1-phosphofructokinase)
to HMM TIGR03828 (pfkB: 1-phosphofructokinase (EC 2.7.1.56))
../bin/blast/fastacmd -i /tmp/list.3934.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3934.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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