Align triose-phosphate isomerase (EC 5.3.1.1) (characterized)
to candidate GFF2201 HP15_2155 triosephosphate isomerase
Query= BRENDA::P0A858 (255 letters) >FitnessBrowser__Marino:GFF2201 Length = 268 Score = 209 bits (531), Expect = 6e-59 Identities = 112/258 (43%), Positives = 161/258 (62%), Gaps = 6/258 (2%) Query: 1 MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCA-VAIAPPEMYIDMAKREAEGSHI 59 MR P+++GNWK+NGS L+ + L + + PP Y+ + + I Sbjct: 1 MRKPILIGNWKMNGSLQANQALMVRVLPRLRMFRKSVDLVVCPPHPYLFQVRDLLGYTGI 60 Query: 60 MLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQ 119 MLGAQN +SGA+TGE SA ML+++G +Y ++GHSERR E ++ +A ++ + + Sbjct: 61 MLGAQNASGFVSGAYTGEVSATMLQEMGCRYALVGHSERRLLFGEGNQEVAARYRSVLQS 120 Query: 120 GLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSAT 179 GLTPVLC+GET + E+G+T + +Q+ AV+ G AA ++AYEPVWAIGTGK+AT Sbjct: 121 GLTPVLCVGETLEDRESGRTGLIIEQQLQAVIDEVGLAAMANGIVAYEPVWAIGTGKTAT 180 Query: 180 PAQAQAVHKFIRDHIAKVDA----NIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGA 235 P Q VH+ IR +AK +I+E++ + YGGSV +NA ELF+ D+DG L+GGA Sbjct: 181 PEQVSEVHQQIRQFLAKSAPESADDISEELRVIYGGSVKVANAYELFSLADVDGGLIGGA 240 Query: 236 SLKADAFAVIVKA-AEAA 252 SL AD F I A AEA+ Sbjct: 241 SLHADEFGTIAGALAEAS 258 Lambda K H 0.316 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 190 Number of extensions: 5 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 255 Length of database: 268 Length adjustment: 25 Effective length of query: 230 Effective length of database: 243 Effective search space: 55890 Effective search space used: 55890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate GFF2201 HP15_2155 (triosephosphate isomerase)
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.6086.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6086.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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