Align hydroxyacylglutathione hydrolase; EC 3.1.2.6 (characterized)
to candidate GFF1848 HP15_1805 hydroxyacylglutathione hydrolase
Query= CharProtDB::CH_024825 (251 letters) >FitnessBrowser__Marino:GFF1848 Length = 264 Score = 224 bits (570), Expect = 2e-63 Identities = 119/263 (45%), Positives = 162/263 (61%), Gaps = 12/263 (4%) Query: 1 MNLNSIPAFDDNYIWVLNDEAG-RCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHV 59 + +++IPAF DNYIW L+D A + LIVDPG A+PVL+ +A N + I +THHH DHV Sbjct: 2 LTISAIPAFSDNYIWCLSDTASDKALIVDPGQAQPVLDHLAENGLTLDTILVTHHHPDHV 61 Query: 60 GGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEFSVIATPGHTLGHICYFS 119 GGVK+L+ +FP V GP ++ KG+T +V G+ F V+ PGHTL HI YF+ Sbjct: 62 GGVKDLISRFPDCRVTGPADSPYKGSTNLVHPGDEVIWEDITFQVLGVPGHTLDHIAYFT 121 Query: 120 ------KPYLFCGDTLFSGGCGRLFEGTASQMYQSLKKLSALPDDTLVCCAHEYTLSNMK 173 +P LFCGDTLF GCGRLFEG+ QM QSL+ L ALP T V CAHEYTL+N++ Sbjct: 122 DVEVNGRPVLFCGDTLFVCGCGRLFEGSPEQMRQSLQTLRALPGKTAVYCAHEYTLANLR 181 Query: 174 FALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLRTED---IDLINVINE 230 FA S LP D + + ++ + R + T+P +L+NE+++N FLR +D +D Sbjct: 182 FARSWLPEDEGLRTFEQECQAARDAGKPTVPSVLENEKRLNPFLRWDDPAVVDSARAYCS 241 Query: 231 ETLLQQPEER--FAWLRSKKDRF 251 L + FA +R KD F Sbjct: 242 SRGLPADSDNAIFAAIRHGKDNF 264 Lambda K H 0.321 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 259 Number of extensions: 8 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 251 Length of database: 264 Length adjustment: 24 Effective length of query: 227 Effective length of database: 240 Effective search space: 54480 Effective search space used: 54480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate GFF1848 HP15_1805 (hydroxyacylglutathione hydrolase)
to HMM TIGR03413 (gloB: hydroxyacylglutathione hydrolase (EC 3.1.2.6))
../bin/blast/fastacmd -i /tmp/list.28629.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28629.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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