Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate GFF65 HP15_65 dihydrolipoamide dehydrogenase
Query= BRENDA::A0A0H2ZB32 (464 letters) >FitnessBrowser__Marino:GFF65 Length = 461 Score = 514 bits (1324), Expect = e-150 Identities = 268/466 (57%), Positives = 337/466 (72%), Gaps = 9/466 (1%) Query: 1 MSQILKTSLLIVGGGPGGYVAAIRAGQLGIPTVLVEGAALGGTCLNVGCIPSKALIHAAE 60 MS+++KT +L+VGGGPGGYVAAIR GQLG+ TVLVE LGGTCL GCIPSKA+IHAA Sbjct: 1 MSEVIKTKVLVVGGGPGGYVAAIRCGQLGLDTVLVEADQLGGTCLTRGCIPSKAMIHAAS 60 Query: 61 EYLKARHYAGRSALGIQV-QAPSIDIARTVEWKDAIVDRLTSGVAALLKKHGVDVVQGWA 119 E+ A + LGI + + P +D+A TV+WKD+IV RL +GVAALLK+ V VV+GW Sbjct: 61 EFSAMMKAASKPHLGISLSEPPKVDLAATVDWKDSIVKRLNTGVAALLKRAKVKVVKGWG 120 Query: 120 RILDGKSVAVELAGGGSQRIECEHLLLAAGSQSVELPILPLGGKVISSTEALAPGSLPKR 179 D K+ VE A G I+ EH++LA GS VELP LPLGGKVISSTEAL+ +P + Sbjct: 121 TFSDAKTCNVETADGVIT-IQSEHVILATGSAPVELPFLPLGGKVISSTEALSLPDVPSK 179 Query: 180 LVVVGGGYIGLELGTAYRKLGVEVAVVEAQPRILPGYDEELTKPVAQALRKLGVELYLGH 239 LVV+G GYIGLELG AY KLG +V +VE+ RILP YDE L +PV + L + V+L+L Sbjct: 180 LVVIGAGYIGLELGIAYAKLGSDVTIVESSDRILPLYDEALVEPVRRWLDESAVKLHLNA 239 Query: 240 SLLGPSENGVRVRDGAGEEREIAADQVLVAVGRKPRSEGWNLESLGLDMNGRAVKVDDQC 299 LG + G+ V G E + AD +LV VGRKP ++GW LE++ LDM+GR V+VD+QC Sbjct: 240 RALGERDGGLAVELEGGSETVLPADNILVTVGRKPVTQGWGLENMALDMDGRYVRVDEQC 299 Query: 300 RTSMRNVWAIGDLAGEPMLAHRAMAQGEMVAELIAGKRRQFAPVAIPAVCFTDPEVVVAG 359 TSM+NVWAIGDL GEPMLAH+A AQGE+VAE+IAGKRR+F PVAIPAVCFT+PE+V G Sbjct: 300 ATSMKNVWAIGDLVGEPMLAHKASAQGEVVAEVIAGKRRRFDPVAIPAVCFTEPEIVSVG 359 Query: 360 LSPEQAKDAGLDCLVASFPFAANGRAMTLEA--NEGFVRVVARRDNHLVVGWQAVGKAVS 417 P A + FP AANGRA++++A N GFVRVVA + H ++G QAVG +S Sbjct: 360 AEPSLA-----GTVTGVFPVAANGRALSMDAGDNGGFVRVVAHSETHRILGVQAVGTHIS 414 Query: 418 ELSTAFAQSLEMGARLEDIAGTIHAHPTLGEAVQEAALRALGHALH 463 EL+ AF ++EMGA ++DI G I AHPTLGE EA+L+ LGHA+H Sbjct: 415 ELTAAFVTAVEMGATVDDIEGMIQAHPTLGEMFHEASLKILGHAIH 460 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 670 Number of extensions: 36 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 464 Length of database: 461 Length adjustment: 33 Effective length of query: 431 Effective length of database: 428 Effective search space: 184468 Effective search space used: 184468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate GFF65 HP15_65 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.4531.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4531.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.