Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate GFF1535 HP15_1499 acetate/propionate kinase
Query= BRENDA::E3W769 (401 letters) >FitnessBrowser__Marino:GFF1535 Length = 398 Score = 349 bits (896), Expect = e-101 Identities = 189/393 (48%), Positives = 255/393 (64%), Gaps = 7/393 (1%) Query: 6 VLVLNCGSSSLKFAIIDAQSGDDKISGLAECFGLEDSRIKWKFNGGKNEAKLGAFTAHRE 65 VLV+NCGSSSLK A+ + Q +S LAE G D+ +G + L A H + Sbjct: 5 VLVVNCGSSSLKLALFNNQHRK-LVSALAERLGQSDAFAH--IDGQEGTIPLDAGAGHDQ 61 Query: 66 AVEFFIVNNILAEHPELAAQIKAIGHRIVHGGEKFTRSVIITPEVIQGIEDCASLAPLHN 125 A+E + + + AIGHR+VHGGE F +V+I +V++ IE CA LAPLHN Sbjct: 62 ALETLVT--AFRDLGLMTTAPSAIGHRVVHGGETFHEAVLIDGDVLKAIESCAGLAPLHN 119 Query: 126 PAHLIGIRAAIASFPQLPQVTVFDTAFHQTMPEKAYIYALPYKLYREHSIRRYGMHGTSH 185 P +L GIRA +A FP +PQ VFDTAFHQT+P +A++YALP YR+ IRRYG HGTSH Sbjct: 120 PVNLSGIRATLAQFPDVPQTAVFDTAFHQTLPRRAFLYALPEAWYRDWGIRRYGFHGTSH 179 Query: 186 FYVCREAAKVLGKDVKDINVICAHLGNGASVAAIKGGKSVDTSMGLTPLEGLVMGTRCGD 245 ++ EAA++LGK +VI AHLGNG S+ AI+ G SVDTSMGLTPLEGLVMGTR GD Sbjct: 180 AFMASEAARLLGKTPATTSVISAHLGNGCSITAIRDGISVDTSMGLTPLEGLVMGTRSGD 239 Query: 246 LDPSIIFHLVKQLGYTLDEVNNLLNKQSGLLGISELTNDCRGIEEGYHDGHKGATLALDI 305 +DP +F ++ G DEV+ +LN++SGLLG+S TND R + E GH+ + A+D+ Sbjct: 240 VDPG-LFDFLRSKGIAADEVHRVLNQESGLLGLSGQTNDMRSLCELADHGHEPSQTAIDV 298 Query: 306 FCYRLAKYIASYTVPLGRLDAIIFTGGIGENSNLIREKVLNLLEIFNFKVDDILN-KAAR 364 FC+RLA+Y+ + L +LDA++FTGGIGENS IRE+ + L++ F++ LN + Sbjct: 299 FCFRLARYVGAMMASLSQLDALVFTGGIGENSPRIREETIRHLKLTGFELSQDLNIHHGQ 358 Query: 365 FGQQGVITQAGTPIAMVIPTNEEWVIAEDAIKL 397 F + + +VIPTNEE VIA +A +L Sbjct: 359 FSDGHIESPDSRFPVLVIPTNEELVIAREATRL 391 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 425 Number of extensions: 20 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 398 Length adjustment: 31 Effective length of query: 370 Effective length of database: 367 Effective search space: 135790 Effective search space used: 135790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate GFF1535 HP15_1499 (acetate/propionate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.19543.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19543.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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