Align β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) (characterized)
to candidate GFF2751 HP15_2695 acetyl-CoA acetyltransferase
Query= metacyc::MONOMER-15952 (401 letters) >FitnessBrowser__Marino:GFF2751 Length = 415 Score = 592 bits (1525), Expect = e-174 Identities = 302/406 (74%), Positives = 344/406 (84%), Gaps = 6/406 (1%) Query: 1 MNEALIIDAVRTPIGRYAGALASVRADDLGAIPLKALIARHPQLDWSAVDDVIYGCANQA 60 + +A I+DA+RTPIGRY GAL++VRADDLGAIP+KAL R+P LDWS +DDV+YGCANQA Sbjct: 7 LKDAYIVDAIRTPIGRYGGALSAVRADDLGAIPIKALAERYPDLDWSKIDDVLYGCANQA 66 Query: 61 GEDNRNVARMAALLAGLPVSVPGTTLNRLCGSGLDAVGSAARALRCGEAGLMLAGGVESM 120 GEDNR+VARM+ LLAGLPV VPG+T+NRLCGSG+DAVGSAARA+R GE LM+AGGVESM Sbjct: 67 GEDNRDVARMSLLLAGLPVDVPGSTINRLCGSGMDAVGSAARAIRTGETQLMIAGGVESM 126 Query: 121 SRAPFVMGKSEQAFGRSAEIFDTTIGWRFVNKLMQQGFGIDSMPETAENVAAQFNISRAD 180 SRAPFVMGK++ AF R AEIFDTTIGWRFVN ++++ +GIDSMPETAENVAA F ISR D Sbjct: 127 SRAPFVMGKADSAFSRKAEIFDTTIGWRFVNPVLKKQYGIDSMPETAENVAADFGISRED 186 Query: 181 QDAFALRSQHKAAAAIANGRLAKEIVAVEIAQRKGPAKIVEHDEHPRGDTTLEQLAKLGT 240 QDAFALRSQ + AAA GRLA EI V I +RK +V+ DEHPR +T+LE+LA L T Sbjct: 187 QDAFALRSQQRTAAAQKEGRLAAEITPVTIPRRKQDPLVVDTDEHPR-ETSLEKLASLPT 245 Query: 241 PFRQGGSVTAGNASGVNDGACALLLASSEAAQRHGLKARARVVGMATAGVEPRIMGIGPV 300 PFR+ G+VTAGNASGVNDGACALLLA ++A +++ LK RARVV MATAGVEPRIMG GP Sbjct: 246 PFRENGTVTAGNASGVNDGACALLLAGADALKQYNLKPRARVVAMATAGVEPRIMGFGPA 305 Query: 301 PATRKVLELTGLALADMDVIELNEAFAAQGLAVLRELGLADDDERVNPNGGAIALGHPLG 360 PATRKVL GL LADMDVIELNEAFAAQ LAV R+LGL DD E VNPNGGAIALGHPLG Sbjct: 306 PATRKVLATAGLELADMDVIELNEAFAAQALAVTRDLGLPDDAEHVNPNGGAIALGHPLG 365 Query: 361 MSGARLVTTALHELEER-----QGRYALCTMCIGVGQGIALIIERI 401 MSGARLVTTAL+ELE R + RYALCTMCIGVGQGIALIIER+ Sbjct: 366 MSGARLVTTALNELERRHAAGQKARYALCTMCIGVGQGIALIIERM 411 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 580 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 415 Length adjustment: 31 Effective length of query: 370 Effective length of database: 384 Effective search space: 142080 Effective search space used: 142080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate GFF2751 HP15_2695 (acetyl-CoA acetyltransferase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.16092.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16092.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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