Align L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88) (characterized)
to candidate 8501416 DvMF_2146 delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq)
Query= BRENDA::Q9K9B2 (515 letters) >FitnessBrowser__Miya:8501416 Length = 1013 Score = 477 bits (1228), Expect = e-139 Identities = 236/512 (46%), Positives = 324/512 (63%) Query: 2 LQPYKHEPFTDFTVEANRKAFEEALGLVEKELGKEYPLIINGERVTTEDKIQSWNPARKD 61 L P+ +E D T+ ANR F A+ V + G PL I G+ VTT+D I S NPA+ Sbjct: 484 LPPFVNESMLDLTIPANRAGFVNAIAEVRGKAGGVIPLFIGGKDVTTDDTIASTNPAKPA 543 Query: 62 QLVGSVSKANQDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVH 121 +++ V + + + AI++A +AF WR+ +P +RA L +AA I RRR E SAW V Sbjct: 544 EVIARVCQGGKPEVDAAIEAAQKAFPAWRDTSPADRAMFLHRAADIARRRMFELSAWQVL 603 Query: 122 EAGKPWKEADADTAEAIDFLEYYARQMIELNRGKEILSRPGEQNRYFYTPMGVTVTISPW 181 E GK W +A D E IDFL+YYA +M+ L + + PGE N FY P G+ I+PW Sbjct: 604 EVGKQWDQAFHDVGEGIDFLDYYAHEMLRLGTPRRMGRAPGELNHLFYQPKGIAAVIAPW 663 Query: 182 NFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEV 241 NF AI +G A A IVTGN V+ KP+S + E+ +AGLP+GV NYVPG + + Sbjct: 664 NFPFAIAIGMAAAAIVTGNPVIFKPSSIASRIGYNLTEIFREAGLPEGVFNYVPGRSSVM 723 Query: 242 GDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADL 301 GDYLV+HP+ S+I FTGS +VG+R+ E+AA V+PGQ KRVI EMGGK+ +++D DADL Sbjct: 724 GDYLVEHPQVSMICFTGSMEVGLRIQEKAAKVQPGQMQCKRVIAEMGGKNAIIIDDDADL 783 Query: 302 DLAAESILVSAFGFSGQKCSAGSRAVIHKDVYDEVLEKTVALAKNLTVGDPTNRDNYMGP 361 D A +L SAFGF GQKCSA SR ++ +YD +E+ V A+ + +G + NYMGP Sbjct: 784 DEAVLQVLYSAFGFQGQKCSACSRVIVLDPIYDRFVERLVKAAQAIKIGPSEDPANYMGP 843 Query: 362 VIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPV 421 V D + I+ Y+++ ++EG+++ + G ++ TI+ + P I QEEIFGPV Sbjct: 844 VADASLQKNILEYVKVAEQEGKVLVKRTDIPAEGCYVPLTIVEGIKPHHRIAQEEIFGPV 903 Query: 422 VAFSKANDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGY 481 +A +A +FD AL IAN T + LTG V +R+ ++ +A+REF VGNLY NR TGA+V Sbjct: 904 LAVMRAGNFDEALAIANGTRFALTGGVFSRSPENLTKARREFRVGNLYLNRGSTGAMVER 963 Query: 482 HPFGGFKMSGTDSKAGGPDYLALHMQAKTVSE 513 PFGGFKMSG SK GGPDYL M + V+E Sbjct: 964 QPFGGFKMSGVGSKTGGPDYLLQFMDPRCVTE 995 Lambda K H 0.316 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1189 Number of extensions: 50 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 515 Length of database: 1013 Length adjustment: 40 Effective length of query: 475 Effective length of database: 973 Effective search space: 462175 Effective search space used: 462175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Align candidate 8501416 DvMF_2146 (delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq))
to HMM TIGR01237 (pruA: putative delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88))
../bin/blast/fastacmd -i /tmp/list.32752.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32752.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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