Align purine-nucleoside phosphorylase (EC 2.4.2.1) (characterized)
to candidate 8500058 DvMF_0821 purine nucleoside phosphorylase (RefSeq)
Query= BRENDA::P00491 (289 letters) >FitnessBrowser__Miya:8500058 Length = 281 Score = 236 bits (602), Expect = 4e-67 Identities = 125/259 (48%), Positives = 169/259 (65%), Gaps = 7/259 (2%) Query: 24 RPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQG 83 RP+V ++CG+GLGGL D L A+ Y +P FP+STV H GR +FG + V+ QG Sbjct: 30 RPRVGVVCGTGLGGLADALADARPLPYSRVPGFPQSTVASHEGRFLFGRIGTVEVVLQQG 89 Query: 84 RFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSG 143 R H+YEGY V VRV LGV+ LV+TNAAG LNP+++ GD+MLI DHIN F+G Sbjct: 90 RCHLYEGYAPEDVCMGVRVMAALGVEMLVITNAAGALNPRWDAGDLMLITDHIN---FTG 146 Query: 144 QNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETV 203 ++PL GPN + +G RFP MS YD T+ + A+ ++G + L+ G YV V GP ET Sbjct: 147 RSPLTGPNHDAWGPRFPDMSAPYDATLGRIAMEEAARLGVR--LERGVYVGVPGPQMETP 204 Query: 204 AECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAA 263 AE R+ ++LGADAVGMSTV EVI ARH GLRV G S +TNK + D +++A EEV+ Sbjct: 205 AETRMYRQLGADAVGMSTVLEVIAARHMGLRVLGISCLTNKNLPD--CMQEAPLEEVIRV 262 Query: 264 GKQAAQKLEQFVSILMASI 282 +A KL + V+ ++ + Sbjct: 263 AGEAGDKLTRLVAAVVERV 281 Lambda K H 0.321 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 262 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 289 Length of database: 281 Length adjustment: 26 Effective length of query: 263 Effective length of database: 255 Effective search space: 67065 Effective search space used: 67065 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 47 (22.7 bits)
Align candidate 8500058 DvMF_0821 (purine nucleoside phosphorylase (RefSeq))
to HMM TIGR01700 (purine nucleoside phosphorylase I, inosine and guanosine-specific (EC 2.4.2.1))
../bin/blast/fastacmd -i /tmp/list.10308.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10308.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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