GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Desulfovibrio vulgaris Miyazaki F

Align Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 (characterized)
to candidate 8501128 DvMF_1864 phosphate acetyltransferase (RefSeq)

Query= SwissProt::P77844
         (329 letters)



>FitnessBrowser__Miya:8501128
          Length = 704

 Score =  388 bits (996), Expect = e-112
 Identities = 194/321 (60%), Positives = 246/321 (76%)

Query: 5   LFENWLLKRARAEHSHIVLPEGDDDRILMAAHQLLDQDICDITILGDPVKIKERATELGL 64
           +FE  L++RA+     IVLPEG ++RIL AA  L  +++ DI +LGD  K+  + +ELG+
Sbjct: 377 MFEFNLIERAKQNRMRIVLPEGVEERILRAADILARREVADIILLGDADKVGAKVSELGI 436

Query: 65  HLNTAYLVNPLTDPRLEEFAEQFAELRKSKSVTIDEAREIMKDISYFGTMMVHNGDADGM 124
            L+   ++ P   P+ EE+A+ + ELRK K V+I+ AR+ M D++YFGTMMVH GDA+GM
Sbjct: 437 ALDGVQIIQPNLSPKFEEYAQAYFELRKHKGVSIERARDTMNDVTYFGTMMVHKGDAEGM 496

Query: 125 VSGAANTTAHTIKPSFQIIKTVPEASVVSSIFLMVLRGRLWAFGDCAVNPNPTAEQLGEI 184
           VSG+ NTTAHTI+P+F+ IKT P  S+VSS+FLM L+ R+ AFGDCAVNPNPTAEQL EI
Sbjct: 497 VSGSINTTAHTIRPAFEFIKTKPGFSIVSSVFLMCLKDRVLAFGDCAVNPNPTAEQLAEI 556

Query: 185 AVVSAKTAAQFGIDPRVAILSYSTGNSGGGSDVDRAIDALAEARRLNPELCVDGPLQFDA 244
           A+ SA TA  FGI+PRVA+LSYSTG+SG G+DV++ I+A   A+   PEL ++GPLQ+DA
Sbjct: 557 AINSAHTARIFGIEPRVAMLSYSTGSSGKGADVEKVIEATRIAKERAPELLLEGPLQYDA 616

Query: 245 AVDPGVARKKMPDSDVAGQANVFIFPDLEAGNIGYKTAQRTGHALAVGPILQGLNKPVND 304
           A+D  VAR K+P S VAGQA VFIFPDL  GN  YK  QR   A+A+GP+LQGLNKPVND
Sbjct: 617 AIDMDVARTKLPGSQVAGQATVFIFPDLNTGNNTYKAVQRAAGAVAIGPVLQGLNKPVND 676

Query: 305 LSRGATVPDIVNTVAITAIQA 325
           LSRG TVPDIVNTVAITAIQA
Sbjct: 677 LSRGCTVPDIVNTVAITAIQA 697


Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 600
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 704
Length adjustment: 34
Effective length of query: 295
Effective length of database: 670
Effective search space:   197650
Effective search space used:   197650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate 8501128 DvMF_1864 (phosphate acetyltransferase (RefSeq))
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.17352.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17352.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.