Align Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 (characterized)
to candidate 8499579 DvMF_0348 Triose-phosphate isomerase (RefSeq)
Query= SwissProt::Q5SJR1 (250 letters) >FitnessBrowser__Miya:8499579 Length = 251 Score = 197 bits (502), Expect = 1e-55 Identities = 113/247 (45%), Positives = 144/247 (58%), Gaps = 6/247 (2%) Query: 5 LVAGNWKMHKTPSEARVWFAELKRLLP---PLQSEAAVLPAFPIL-PVAKEVLAETQVGY 60 L+A NWKM+KT EAR A L L P E + P F L PVA + T Sbjct: 4 LMAANWKMYKTAGEARTTAASLAALTADTLPDDREVVIFPQFTALSPVADALRHATGYSV 63 Query: 61 GAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGI 120 G QDV EGAYTGE+S ML D GC + + GHSERR GE+D LV K + G+ Sbjct: 64 GGQDVYPAAEGAYTGEISPGMLMDCGCAWVLTGHSERRHVIGESDELVGAKTAFSINAGL 123 Query: 121 TPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPG-PEALVIAYEPVWAIGTGKNATP 179 +LC+GE +E RE G RQL L GV+ P A+ +AYEPVWAIGTGK A P Sbjct: 124 KVVLCIGETIEEREAGRLGEVLERQLETGLAGVKGDAVPAAIAVAYEPVWAIGTGKVAGP 183 Query: 180 EDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLEL 239 + H +R+ L R+GE + VRILYGGSV P+N +++++ NVDG LVGGASL+ Sbjct: 184 PEIVEAHALVRQLLVARFGEGGVA-VRILYGGSVKPENAREIIALDNVDGVLVGGASLQA 242 Query: 240 ESFLALL 246 +SF ++ Sbjct: 243 DSFSRII 249 Lambda K H 0.317 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 205 Number of extensions: 11 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 250 Length of database: 251 Length adjustment: 24 Effective length of query: 226 Effective length of database: 227 Effective search space: 51302 Effective search space used: 51302 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate 8499579 DvMF_0348 (Triose-phosphate isomerase (RefSeq))
to HMM TIGR00419 (tpiA: triose-phosphate isomerase (EC 5.3.1.1))
../bin/blast/fastacmd -i /tmp/list.12593.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12593.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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