Align acetate-CoA ligase (EC 6.2.1.1) (characterized)
to candidate 8502070 DvMF_2783 acetate/CoA ligase (RefSeq)
Query= BRENDA::Q2XNL6 (634 letters) >FitnessBrowser__Miya:8502070 Length = 651 Score = 713 bits (1840), Expect = 0.0 Identities = 347/641 (54%), Positives = 458/641 (71%), Gaps = 17/641 (2%) Query: 8 LLEEKRVFKPHYTVVEEAHIKNWE---AELEKGKDHENYWAEKAERLEWFRKWDRVLDES 64 LL E+RVF+P VV A + + A D + YW E AE LEWFR+WD V D S Sbjct: 11 LLREERVFRPLPQVVAGAVVNPQDVARARARAAADPDGYWEEAAEELEWFRRWDAVHDGS 70 Query: 65 NRPFYRWFVNGKINMTYNAVDRWLDTDKRNQVAILYVNERGDERKLTYYELYREVSRTAN 124 N PF+RWF + N+ +NA+DR ++T +N++A+++ E GD R TYY+LYREV+R AN Sbjct: 71 NAPFHRWFTGARCNIVHNALDRHIETGTKNRLALIWEGESGDTRSFTYYQLYREVNRLAN 130 Query: 125 ALKSLGIKKGDAVALYLPMCPELVVSMLACAKIGAVHSVIYSGLSVGALVERLNDARAKI 184 AL+ LG+ KGD V +Y+P PE V +MLA AKIGAVHS ++ G S +L +R+ DAR + Sbjct: 131 ALRGLGVGKGDRVIIYMPPLPETVFAMLAAAKIGAVHSTVFGGFSARSLRDRMEDARPAV 190 Query: 185 IITADGTYRRGGVIKLKPIVDEAILQCPT-----IETTVVVKHTDIDIEMSDISGREMLF 239 I+T DG YR G VI LKPI DEA+ P + VVV ++ M++ GR++ + Sbjct: 191 IVTVDGFYRNGRVIPLKPIADEAVATLPPDLAAGVRHMVVVHRAHVETPMTE--GRDIWY 248 Query: 240 DKLIEGEGDRCDAEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYMVGVASTLEMTFDIHN 299 + G+ E MD+ DPLF+LYTSG+TGKPKG +H GGYMVGV T+ FD+ Sbjct: 249 HDAVRGQHHEALTEIMDSTDPLFLLYTSGTTGKPKGHVHAHGGYMVGVHRTMRWVFDVKP 308 Query: 300 GDLWWCTADIGWITGHSYVVYGPLLLGTTTLLYEGAPDYPDPGVWWSIVEKYGVTKFYTA 359 D++WCTA+ GWITGHSYVVYGPL+ GTTT+LYEG P YP+PG WS+VE+ G+T YTA Sbjct: 309 TDIFWCTAEPGWITGHSYVVYGPLMAGTTTVLYEGHPLYPEPGRVWSMVERLGITILYTA 368 Query: 360 PTAIRHLMRFGDKHPKRYNLESLKILGTVGEPINPEAWMWYYRNIGREKCPIIDTWWQTE 419 PT +R LMR G +H R++L +L++LGTVGEPI+PEAW+W++R++GR +CP++DTWWQTE Sbjct: 369 PTLVRMLMRHGAQHVARHDLTTLRLLGTVGEPISPEAWLWFHRHVGRGRCPVLDTWWQTE 428 Query: 420 TGMHLIAPLPVTPLKPGSVTKPLPGIEADVVDENGDPVPLGKGGFLVIRKPWPAMFRTLF 479 TGM +++PLPV+ LKPGSVT+PLPGIEADVVDE+G PV G GG LV+++PWPAM ++ Sbjct: 429 TGMIMLSPLPVSLLKPGSVTRPLPGIEADVVDEHGKPVGPGHGGLLVLQRPWPAMSCGVY 488 Query: 480 NDEQRYIDVYWKQIPGGVYTAGDMARKDEDGYFWIQGRSDDVLNIAGHRIGTAEVESVFV 539 ND++ Y +YW++ PG Y GD+AR+DEDGYFWIQGR+DDVL IAGHRIGTAE+E+ Sbjct: 489 NDDESYRRLYWERFPGW-YCTGDVARRDEDGYFWIQGRADDVLLIAGHRIGTAEMEAALA 547 Query: 540 AHPAVAEAAVIGKADPIKGEVIKAFLILKKGH-----KLNA-ALIEELKRHLRHELGPVA 593 +H +VAE AVIG D ++GEV KAF++L H +NA L EL H+R ELGPVA Sbjct: 548 SHRSVAECAVIGVPDALRGEVAKAFVVLVDDHPPLGTMVNADELAAELVEHVRRELGPVA 607 Query: 594 VVGEMVQVDSLPKTRSGKIMRRILRAREEGEDLGDTSTLEE 634 V+ E+ + LP+ RSGKIMRR+LR+ E G D GD STLE+ Sbjct: 608 VIREVSFREGLPRNRSGKIMRRVLRSEELGRDTGDLSTLED 648 Lambda K H 0.319 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1378 Number of extensions: 68 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 634 Length of database: 651 Length adjustment: 38 Effective length of query: 596 Effective length of database: 613 Effective search space: 365348 Effective search space used: 365348 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 8502070 DvMF_2783 (acetate/CoA ligase (RefSeq))
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.9888.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9888.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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