Align Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized)
to candidate 8501039 DvMF_1775 acetate/CoA ligase (RefSeq)
Query= SwissProt::Q8ZKF6 (652 letters) >FitnessBrowser__Miya:8501039 Length = 667 Score = 748 bits (1932), Expect = 0.0 Identities = 370/627 (59%), Positives = 468/627 (74%), Gaps = 10/627 (1%) Query: 22 EQYETKYKQSINDPDTFWGEQGK-ILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAAN 80 ++Y +++ DP+ FWG++ + +LDW TP+ KV + I+W++ TLN+A N Sbjct: 38 DEYLAHRERADKDPEGFWGDRARQLLDWFTPWDKVMDADM--NEPRIEWFKGATLNVAYN 95 Query: 81 CLDRHLQENGDRT--AIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 CLDRHL NG R AIIW+G+ + ++Y+ L+ +VCRFA+ L LG++KGD VA+Y Sbjct: 96 CLDRHLV-NGRRNKAAIIWQGEPEDDVRVLTYQMLYDEVCRFASVLQGLGVQKGDRVALY 154 Query: 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPL 198 MPM+PE AVAMLACARIGAVHS++F GFS ++ RI D +++V+TAD +RAGRSIPL Sbjct: 155 MPMIPELAVAMLACARIGAVHSIVFAGFSAVSLQNRIQDCEAKVVVTADAVLRAGRSIPL 214 Query: 199 KKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRD-LIEKASPEHQPEA-MNAE 256 K NVD+ALK+ SVE V+V+ R S+ +EGRD+WW + + ++ P A M++E Sbjct: 215 KVNVDEALKD--CPSVERVVVVDRAHSNCAMREGRDMWWHEAMADRTLDTSCPCAKMDSE 272 Query: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 316 D LFILYTSGSTGKPKGV+HTTGGYL YAA T ++VFD H D+YWCTAD+GW+TGHSY+ Sbjct: 273 DMLFILYTSGSTGKPKGVVHTTGGYLAYAAHTTQWVFDLHDDDVYWCTADIGWITGHSYI 332 Query: 317 LYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD 376 +YGPLA G TTLMFEGVP+WP P R +V+K +VNI YTAPT IRALM EG + D Sbjct: 333 VYGPLALGGTTLMFEGVPSWPGPDRFWHIVEKFRVNIFYTAPTVIRALMREGAHWTQKHD 392 Query: 377 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGS 436 SSLR+LGSVGEPINPEAW WY + IG + P+VDTWWQTETGG MI+ LP A LK GS Sbjct: 393 LSSLRVLGSVGEPINPEAWMWYHEHIGHSRLPIVDTWWQTETGGIMISALPYATTLKPGS 452 Query: 437 ATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496 AT P G+ A+V +G P G+LV+ WPG R +FG ER++ TYF F MY Sbjct: 453 ATMPLPGIDAAVVKADGTPCGPNEGGHLVVRKPWPGMLRGVFGSPERYKSTYFERFPGMY 512 Query: 497 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 556 SGDGAR DEDGY W+ GR+DDV+NVSGHR+GTAE+ESALV+HP +AEAAVVG+PHAIKG Sbjct: 513 ESGDGARTDEDGYTWVMGRLDDVINVSGHRMGTAEVESALVSHPAVAEAAVVGMPHAIKG 572 Query: 557 QAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616 +AIYAYVTL+ G E + EL A +R WVRKEIGP+ATP+V+ + + LPKTRSGKIMRRILR Sbjct: 573 EAIYAYVTLSAGTEETEELRAALRTWVRKEIGPIATPEVIQFAEGLPKTRSGKIMRRILR 632 Query: 617 KIAAGDTSNLGDTSTLADPGVVEKLLE 643 KIA+G S+ GDTSTLADPGVV+ L+E Sbjct: 633 KIASGAGSDFGDTSTLADPGVVQDLIE 659 Lambda K H 0.317 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1442 Number of extensions: 62 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 652 Length of database: 667 Length adjustment: 38 Effective length of query: 614 Effective length of database: 629 Effective search space: 386206 Effective search space used: 386206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 8501039 DvMF_1775 (acetate/CoA ligase (RefSeq))
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.13165.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13165.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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