Align Malate synthase G (EC 2.3.3.9) (characterized)
to candidate 8501453 DvMF_2183 malate synthase G (RefSeq)
Query= reanno::psRCH2:GFF353 (726 letters) >FitnessBrowser__Miya:8501453 Length = 731 Score = 930 bits (2404), Expect = 0.0 Identities = 460/731 (62%), Positives = 558/731 (76%), Gaps = 6/731 (0%) Query: 1 MTERVQVGGLQVAKVLYDFVNNEAIPGTGVDAAAFWAGADSVIHDLAPKNRALLAKRDDL 60 MT+RVQVGGLQ+A LYD + + PGTGVD FW ++++ +A +NRALLAKR +L Sbjct: 1 MTQRVQVGGLQIAAPLYDVIVRDIAPGTGVDPDRFWTALENMVETMADRNRALLAKRAEL 60 Query: 61 QAQIDAWHQARAGQAHDAVAYKSFLQEIGYLLPEAEDFQATTENVDEEIARMAGPQLVVP 120 Q IDAWH+ R G HD AY++FL+ IGYL+PE DF TTE VD EIA +AGPQLVVP Sbjct: 61 QDAIDAWHRERRGTPHDGAAYEAFLRSIGYLVPEGPDFAVTTEGVDPEIALVAGPQLVVP 120 Query: 121 IMNARFALNAANARWGSLYDALYGTDAISE---ADGASKGPGYNEIRGNKVIAYARNFLN 177 I NAR+ALNAANARWGSLYDALYGTD I E GA +G YN RG V+A A FL+ Sbjct: 121 ITNARYALNAANARWGSLYDALYGTDVIPEDPARGGAPRGGAYNPARGALVVARAAAFLD 180 Query: 178 EAAPLETGSHVDSTGYRIEGGKLVVSLKDGSTTGLKNPAQLQGFQGE-ASAPIAVLLKNN 236 EA PL TGSH D+ Y + GGKL V LKDG+ TGL +PA+ G G+ A AVLL+N+ Sbjct: 181 EAFPLATGSHADAARYDVRGGKLAVILKDGAETGLADPARFVGHAGDPAGGNGAVLLRNH 240 Query: 237 GIHFEIQIDPASPIGQTDAAGVKDILMESALTTIMDCEDSIAAVDADDKTVVYRNWLGLM 296 G+H EI+ID IG+ AAGV+D++ME+A+TTI+DCEDS+A VD DK + YRN LGL Sbjct: 241 GLHAEIRIDREHAIGRGHAAGVRDVVMEAAMTTILDCEDSVAVVDGADKALAYRNMLGLF 300 Query: 297 KGDLVEELEKGGKRITRAMNPDRVYTKADGNGELTLHGRSLLFIRNVGHLMTNDAILDKE 356 +GDL E KGG+ + R +NPDR YT DG +L GRSLL +R VGHLMT DA+L + Sbjct: 301 RGDLSAEFPKGGRSVLRTLNPDREYTGPDG-AAFSLPGRSLLLVRTVGHLMTTDAVLARS 359 Query: 357 GNEVPEGIMDGLFTSLIAVHNLNGNTSRKNTRTGSMYIVKPKMHGPEEVAFATELFGRVE 416 G E+PEG++D + T+ IA+H+L G +S +N+RTG +YIVKPK HGPEEVAF ELF E Sbjct: 360 GEEIPEGMLDTMATAYIALHDLRGTSSVRNSRTGGVYIVKPKQHGPEEVAFTVELFRMAE 419 Query: 417 DVLGLPRNTLKVGIMDEERRTTINLKACIKEARERVVFINTGFLDRTGDEIHTSMEAGPM 476 D LG+PRNTLK+GIMDEERRTT+NLK CI+ A ERV+FINTGFLDRTGDEIHT MEAGP+ Sbjct: 420 DALGMPRNTLKIGIMDEERRTTVNLKECIRAAAERVIFINTGFLDRTGDEIHTCMEAGPV 479 Query: 477 VRKAAMKAEKWISAYENNNVDVGLACGLQGKAQIGKGMWAMPDLMAAMLEQKVGHPMAGA 536 VRK AM+ E+WI AYE+ NVD GLACGL G+AQ+GKGMWA PD+M M+E K+GHP AGA Sbjct: 480 VRKNAMRGERWIIAYEDWNVDTGLACGLAGRAQVGKGMWAKPDMMREMVETKIGHPRAGA 539 Query: 537 NTAWVPSPTAATLHAMHYHKIDVQARQVELAKREKASIDDILTIPL-AQDTNWSEEEKRN 595 N AWVPSPTAATLHAMHYH +DV A Q LA + +A++ D+LT+PL + + +E Sbjct: 540 NCAWVPSPTAATLHAMHYHAVDVAAVQKTLAGQRRATLADLLTLPLMGPASRPTPQEVEE 599 Query: 596 ELDNNSQGILGYMVRWVEQGVGCSKVPDINDIALMEDRATLRISSQHVANWMRHGVVTKD 655 EL NN+Q ILGY+VRWVEQG+GCSKVPDI D+ LMEDRATLRISSQH+ANW+ HG+ T+D Sbjct: 600 ELANNAQSILGYVVRWVEQGIGCSKVPDITDVGLMEDRATLRISSQHIANWLHHGICTRD 659 Query: 656 QVVESLKRMAPVVDRQNQGDPLYRPMAPDFDNSVAFQAALELVLEGTKQPNGYTEPVLHR 715 QVV LKRMA VVDRQN GDP YRPM+ DFD SVAFQAA +LVL G +QP+GYTEP+LH Sbjct: 660 QVVAVLKRMAAVVDRQNAGDPAYRPMSADFDASVAFQAACDLVLLGREQPSGYTEPILHA 719 Query: 716 RRREFKAKNGL 726 RR+E KAK G+ Sbjct: 720 RRQEAKAKFGI 730 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1424 Number of extensions: 47 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 726 Length of database: 731 Length adjustment: 40 Effective length of query: 686 Effective length of database: 691 Effective search space: 474026 Effective search space used: 474026 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Align candidate 8501453 DvMF_2183 (malate synthase G (RefSeq))
to HMM TIGR01345 (glcB: malate synthase G (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.5628.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5628.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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