Align Malate synthase (EC 2.3.3.9) (characterized)
to candidate Dsui_0019 Dsui_0019 malate synthase A
Query= reanno::BFirm:BPHYT_RS12305 (536 letters) >FitnessBrowser__PS:Dsui_0019 Length = 532 Score = 766 bits (1979), Expect = 0.0 Identities = 374/529 (70%), Positives = 438/529 (82%), Gaps = 5/529 (0%) Query: 10 SLQLPQGMEITAEIKPGYDAILSREALELVAALHRTFEPRRQQLLQARAERTKRLDAGER 69 SL LP GM+ITA I+P Y++IL+ EALE VA LHR FE RRQ+LL+AR ER R+DAGE Sbjct: 2 SLNLPAGMQITAPIQPQYESILTLEALEFVAKLHRAFEGRRQELLKARVERQARIDAGEM 61 Query: 70 PDFLAETKSVRDGDWTIAPLPQDLQCRRVEITGPVERKMIINALNSGADSYMTDFEDSNA 129 PDFL ETK +R+GDW +APLP L+ RR EITGPVE KMIINA NSGADSYMTDFEDSN+ Sbjct: 62 PDFLPETKHIREGDWKVAPLPAALERRRTEITGPVEAKMIINAFNSGADSYMTDFEDSNS 121 Query: 130 PSWDNQITGHINLKDAVRRTISLEQN-GKSYTLNDKVATLIVRPRGWHLDEKHVKVDGKR 188 P+WDNQI G +NL A+RR +S + GK Y LND++ATL +RPRGWHLDEKHV VDG+R Sbjct: 122 PNWDNQIQGQVNLYQAIRRQLSFKNEAGKEYKLNDQIATLQIRPRGWHLDEKHVTVDGQR 181 Query: 189 VSGGIFDFALFMVHNAKELVARGSGPYFYLPKMESHLEARLWNDIFVAAQEAVGVPRGTI 248 V+GGIFDFAL HNAKE +ARG+GP++YLPKMESHLEARLWNDIFV AQ+ +G+P+GTI Sbjct: 182 VAGGIFDFALVFFHNAKEQIARGAGPFYYLPKMESHLEARLWNDIFVMAQDHIGLPQGTI 241 Query: 249 RATVLIETIVAAFEMDEILYELREHSSGLNAGRWDYIFSAIKKFKADRDFCLADRSQITM 308 +ATVL+ETI+A FEM+EILYELR HS+GLNAGRWDYIFS IKKFK ++DFCLA R ITM Sbjct: 242 KATVLVETILATFEMEEILYELRNHSAGLNAGRWDYIFSCIKKFKKNKDFCLAQRGVITM 301 Query: 309 TSPFMRAYALLLLKTCHRRNAPAIGGMSALIPIKNDPAANDKAMSGVRSDKARDAGDGYD 368 PFMR+YAL L++ CH+R APA+GGMSALIPIKNDP AN+KA++G+R DKARDA DG+D Sbjct: 302 EVPFMRSYALALVQACHKRGAPAMGGMSALIPIKNDPVANEKALAGIRHDKARDAKDGFD 361 Query: 369 GGWVAHPGLVPIAMEEFVKVLGDKPNQIGKQRDDVLVTATDLTDFRPEAPITEGGLRNNI 428 GGWVAHPGLV IA EEFVKVLGDKPNQ KQ + D +F+PE PITE GLRNNI Sbjct: 362 GGWVAHPGLVSIAHEEFVKVLGDKPNQWEKQVEGSF-GPKDWLNFQPEQPITEAGLRNNI 420 Query: 429 NVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGKLEDGRKVTAELVRE 488 NVGIHYLG+WLAGNGCVPIHNLMEDAATAEISRSQVWQW+ SPKG L+DGRKVT E+VR Sbjct: 421 NVGIHYLGSWLAGNGCVPIHNLMEDAATAEISRSQVWQWVVSPKGILDDGRKVTVEMVRP 480 Query: 489 LSAQELEKVKQAV---GGDTKPYERAAQIFEEMSTSEQFTDFLTLPLYE 534 + A+EL KVK V G DT Y++AA IF++MS + + +FLTLPLYE Sbjct: 481 MIAEELAKVKATVAAQGEDTATYDQAAVIFDKMSLTPDYPEFLTLPLYE 529 Lambda K H 0.318 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 808 Number of extensions: 17 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 536 Length of database: 532 Length adjustment: 35 Effective length of query: 501 Effective length of database: 497 Effective search space: 248997 Effective search space used: 248997 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate Dsui_0019 Dsui_0019 (malate synthase A)
to HMM TIGR01344 (aceB: malate synthase A (EC 2.3.3.9))
../bin/blast/fastacmd -i /tmp/list.28117.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28117.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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