Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Dsui_0602 Dsui_0602 pyrroline-5-carboxylate reductase
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__PS:Dsui_0602 Length = 270 Score = 229 bits (585), Expect = 4e-65 Identities = 128/268 (47%), Positives = 168/268 (62%), Gaps = 1/268 (0%) Query: 5 RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64 +I F+G GNMA +LIGGL +G A I + A+ R+K+ + + A D Sbjct: 2 KITFLGGGNMANALIGGLVNKGFAAGDIAVVELNADNRSKLEAAYGVRTFAGAEAAAWDC 61 Query: 65 DVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTPA 124 DV+VL+VKPQ+MK + P LK +QL+VSIAAG+ ASL WLG R +VR MPNTPA Sbjct: 62 DVIVLAVKPQSMKEAIAPIGPHLK-DQLVVSIAAGLNLASLSRWLGGHRRLVRTMPNTPA 120 Query: 125 LLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLLM 184 L+ G +GLYA +V AA A ++L AVG A+W DE+Q+DAVTAVSGSGPAY FL + Sbjct: 121 LIGAGVTGLYALPEVDAAGRAAAQRVLEAVGSAVWFADESQMDAVTAVSGSGPAYVFLFI 180 Query: 185 QAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSF 244 +A+ AG+ LG E A RL ++T LGAAQ+A S + LR RVTS GTT AA+ Sbjct: 181 EALQQAGKDLGFDDEQARRLAIETVLGAAQLAAQSPDPASVLRERVTSKGGTTAAALAVM 240 Query: 245 QANGFEALVEQALNAASQRSAELAEQLG 272 + G +A + + AA R EL +QLG Sbjct: 241 ETAGVKAGIIAGVKAAEARGVELGQQLG 268 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 199 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 270 Length adjustment: 25 Effective length of query: 248 Effective length of database: 245 Effective search space: 60760 Effective search space used: 60760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate Dsui_0602 Dsui_0602 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.31930.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31930.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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