GapMind for catabolism of small carbon sources

 

Alignments for a candidate for PRO3 in Dechlorosoma suillum PS

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate Dsui_0602 Dsui_0602 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>FitnessBrowser__PS:Dsui_0602
          Length = 270

 Score =  229 bits (585), Expect = 4e-65
 Identities = 128/268 (47%), Positives = 168/268 (62%), Gaps = 1/268 (0%)

Query: 5   RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64
           +I F+G GNMA +LIGGL  +G  A  I   +  A+ R+K+   + +        A  D 
Sbjct: 2   KITFLGGGNMANALIGGLVNKGFAAGDIAVVELNADNRSKLEAAYGVRTFAGAEAAAWDC 61

Query: 65  DVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTPA 124
           DV+VL+VKPQ+MK     + P LK +QL+VSIAAG+  ASL  WLG  R +VR MPNTPA
Sbjct: 62  DVIVLAVKPQSMKEAIAPIGPHLK-DQLVVSIAAGLNLASLSRWLGGHRRLVRTMPNTPA 120

Query: 125 LLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLLM 184
           L+  G +GLYA  +V AA    A ++L AVG A+W  DE+Q+DAVTAVSGSGPAY FL +
Sbjct: 121 LIGAGVTGLYALPEVDAAGRAAAQRVLEAVGSAVWFADESQMDAVTAVSGSGPAYVFLFI 180

Query: 185 QAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSF 244
           +A+  AG+ LG   E A RL ++T LGAAQ+A  S    + LR RVTS  GTT AA+   
Sbjct: 181 EALQQAGKDLGFDDEQARRLAIETVLGAAQLAAQSPDPASVLRERVTSKGGTTAAALAVM 240

Query: 245 QANGFEALVEQALNAASQRSAELAEQLG 272
           +  G +A +   + AA  R  EL +QLG
Sbjct: 241 ETAGVKAGIIAGVKAAEARGVELGQQLG 268


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 199
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 270
Length adjustment: 25
Effective length of query: 248
Effective length of database: 245
Effective search space:    60760
Effective search space used:    60760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate Dsui_0602 Dsui_0602 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.31930.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31930.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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