Align UDP-glucose 4-epimerase; EC 5.1.3.2; Galactowaldenase; UDP-galactose 4-epimerase (uncharacterized)
to candidate Dsui_0398 Dsui_0398 UDP-glucose-4-epimerase
Query= curated2:P55180 (339 letters) >FitnessBrowser__PS:Dsui_0398 Length = 337 Score = 423 bits (1087), Expect = e-123 Identities = 205/332 (61%), Positives = 248/332 (74%) Query: 1 MAILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLL 60 M ILVTGG GYIGSHTCVELL +G+ + +LDNLSNS A+ R+ + G F E D+ Sbjct: 1 MHILVTGGLGYIGSHTCVELLQAGHGVTILDNLSNSRADVAERIAGLGGAAPIFIEGDVR 60 Query: 61 DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIV 120 DR+ + +F E ++AVIHFAGLKAVGESVA PL+YY N+ G+ +L EAM + GVK +V Sbjct: 61 DRQLLCRIFREQTVDAVIHFAGLKAVGESVAQPLRYYECNVGGSLVLFEAMAEAGVKTLV 120 Query: 121 FSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPF 180 FSSSATVYG P PI EDFPL ATNPYG++KLMLE++L D+ AD++W +A LRYFNP Sbjct: 121 FSSSATVYGDPHAVPIREDFPLRATNPYGRSKLMLEEVLADMAAADSQWRIARLRYFNPV 180 Query: 181 GAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAE 240 GAH SG +GE PNGIPNNLMPYVAQVA G +LSVFGNDYPT DGTGVRD+IHVVDLA+ Sbjct: 181 GAHESGLLGEAPNGIPNNLMPYVAQVAAGLRARLSVFGNDYPTPDGTGVRDFIHVVDLAQ 240 Query: 241 GHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFA 300 GH+ AL + G NLGTG GYSVL++V+AFE SG+ +P+ F RRPGDIA C+A Sbjct: 241 GHLAALAALARGEGMLTVNLGTGRGYSVLDLVRAFEAASGRTIPFDFVPRRPGDIAACYA 300 Query: 301 DPAKAKRELGWEAKRGLEEMCADSWRWQSSNV 332 DPA A LGW A+R L MC D+WRWQ + V Sbjct: 301 DPALAASLLGWTARRDLAAMCRDTWRWQQTAV 332 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 407 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 339 Length of database: 337 Length adjustment: 28 Effective length of query: 311 Effective length of database: 309 Effective search space: 96099 Effective search space used: 96099 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Dsui_0398 Dsui_0398 (UDP-glucose-4-epimerase)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.14968.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14968.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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