GapMind for catabolism of small carbon sources

 

Alignments for a candidate for galE in Dechlorosoma suillum PS

Align UDP-glucose 4-epimerase; EC 5.1.3.2; Galactowaldenase; UDP-galactose 4-epimerase (uncharacterized)
to candidate Dsui_0398 Dsui_0398 UDP-glucose-4-epimerase

Query= curated2:P55180
         (339 letters)



>FitnessBrowser__PS:Dsui_0398
          Length = 337

 Score =  423 bits (1087), Expect = e-123
 Identities = 205/332 (61%), Positives = 248/332 (74%)

Query: 1   MAILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLL 60
           M ILVTGG GYIGSHTCVELL +G+ + +LDNLSNS A+   R+  + G    F E D+ 
Sbjct: 1   MHILVTGGLGYIGSHTCVELLQAGHGVTILDNLSNSRADVAERIAGLGGAAPIFIEGDVR 60

Query: 61  DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIV 120
           DR+ +  +F E  ++AVIHFAGLKAVGESVA PL+YY  N+ G+ +L EAM + GVK +V
Sbjct: 61  DRQLLCRIFREQTVDAVIHFAGLKAVGESVAQPLRYYECNVGGSLVLFEAMAEAGVKTLV 120

Query: 121 FSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPF 180
           FSSSATVYG P   PI EDFPL ATNPYG++KLMLE++L D+  AD++W +A LRYFNP 
Sbjct: 121 FSSSATVYGDPHAVPIREDFPLRATNPYGRSKLMLEEVLADMAAADSQWRIARLRYFNPV 180

Query: 181 GAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAE 240
           GAH SG +GE PNGIPNNLMPYVAQVA G   +LSVFGNDYPT DGTGVRD+IHVVDLA+
Sbjct: 181 GAHESGLLGEAPNGIPNNLMPYVAQVAAGLRARLSVFGNDYPTPDGTGVRDFIHVVDLAQ 240

Query: 241 GHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFA 300
           GH+ AL  +    G    NLGTG GYSVL++V+AFE  SG+ +P+ F  RRPGDIA C+A
Sbjct: 241 GHLAALAALARGEGMLTVNLGTGRGYSVLDLVRAFEAASGRTIPFDFVPRRPGDIAACYA 300

Query: 301 DPAKAKRELGWEAKRGLEEMCADSWRWQSSNV 332
           DPA A   LGW A+R L  MC D+WRWQ + V
Sbjct: 301 DPALAASLLGWTARRDLAAMCRDTWRWQQTAV 332


Lambda     K      H
   0.315    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 407
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 337
Length adjustment: 28
Effective length of query: 311
Effective length of database: 309
Effective search space:    96099
Effective search space used:    96099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Dsui_0398 Dsui_0398 (UDP-glucose-4-epimerase)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.14968.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14968.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.