Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate Dsui_1576 Dsui_1576 dihydrolipoamide dehydrogenase
Query= BRENDA::Q0KBV8 (594 letters) >FitnessBrowser__PS:Dsui_1576 Length = 581 Score = 815 bits (2105), Expect = 0.0 Identities = 417/593 (70%), Positives = 484/593 (81%), Gaps = 16/593 (2%) Query: 3 VIEVKVPDIGDFDAVEVIEVLVKAGDTVEVEQSLIVLESDKASMDVPSSAAGKVVEVKVK 62 ++EVKVPDIGDF V VIEV VK GDTV+VE L+ LESDKA+MDVPSSAAG V E+KVK Sbjct: 4 LVEVKVPDIGDFKDVPVIEVFVKVGDTVKVEDPLVSLESDKATMDVPSSAAGVVKEIKVK 63 Query: 63 VGDKVGQGAVICTIEAQQAAAAPAPAQAPAPAQAPAPAAAAPAPAPAAASHSGGADIQCE 122 +GDKV +G VI +EA AAAAPAP Q APA APAPAAA P P A SH GGAD++C+ Sbjct: 64 LGDKVAEGTVIVVVEAGAAAAAPAP-QPAAPAAAPAPAAAPP---PVAGSHGGGADVECD 119 Query: 123 MLVLGAGPGGYSAAFRAADLGMNTVLVERYSTLGGVCLNVGCIPSKALLHNAAVIDEAKA 182 MLVLGAGPGGYSAAFR+ADLG+ TVLVERY TLGGVCLNVGCIPSKALLH AAV++EA+ Sbjct: 120 MLVLGAGPGGYSAAFRSADLGLKTVLVERYPTLGGVCLNVGCIPSKALLHVAAVLEEAQH 179 Query: 183 LAAHGILFGEAKIDLDGLRHYKNQVVGKLTGGLAGMAKARKVQVVRGIGNFLDPHHMEVE 242 LA G+ F ++D+D LR +K +VVGKLTGGLAGMAK RKVQ V+G+G F+DPHH+EV Sbjct: 180 LADCGVTFAAPQVDVDKLRAHKEKVVGKLTGGLAGMAKGRKVQHVQGVGQFIDPHHIEVT 239 Query: 243 LTEGEGKRSTGKKTVIRFEKAIIAAGSQAVKLPFIP-EDPRIVDSTGALELPEVPNKMLV 301 +G KK V++F+ AIIAAGSQ V LPF+P +DPR++DSTGALEL VP KMLV Sbjct: 240 AADG-------KKQVVKFKNAIIAAGSQPVALPFMPKDDPRVIDSTGALELRSVPKKMLV 292 Query: 302 IGGGIIGLEMATVYSTLGADIDVVEMLDGLMNGADRDLVKVWEKKNKDRFGKVMLKTKTV 361 IGGGIIGLEMATVYS LG I VVE+ GLM GADRDLVKVWEKKN RF +++L T Sbjct: 293 IGGGIIGLEMATVYSALGTRITVVELGPGLMPGADRDLVKVWEKKNTQRFDRILLATGVT 352 Query: 362 GVEAKPDGIYVKFEGEAAPAEPQRYDLVLVSVGRSPNGKRISAEKAGVAVSERGFINVDK 421 EAK +GI V + + E + +DLVLV+VGR+PNGK+I+A+KAGVAV++RGFINVD Sbjct: 353 AAEAKAEGIEVTY----STGEKEAFDLVLVAVGRTPNGKKIAADKAGVAVTDRGFINVDA 408 Query: 422 QMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEAAHGEKAYFDAKQIPSVAFTDPEVAW 481 QMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAE A GEKA FDA QIPSVA+T PE+AW Sbjct: 409 QMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVAAGEKAAFDALQIPSVAYTHPEIAW 468 Query: 482 AGLTEDECKEKGIKYSKGVFPWAASGRAIANGRDEGFTKLIFDEETHRVIGGGIVGTHAG 541 AG TED+ K GIK+ K VFPWAASGRAIANG +EGFTKL+FD E+HR++GGGIVG +AG Sbjct: 469 AGKTEDQLKNDGIKFEKAVFPWAASGRAIANGAEEGFTKLLFDAESHRLLGGGIVGMNAG 528 Query: 542 DLISEVCLAIEMGADAVDIGKTIHPHPTLGESIGMAAEIYEGTCTDVPPPRKR 594 DLI EVCLA+EMG DAVDIGKTIHPHPTL ESIGMAAE+ G+CTD+PP +K+ Sbjct: 529 DLIGEVCLAVEMGCDAVDIGKTIHPHPTLCESIGMAAEVAHGSCTDLPPMKKK 581 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1053 Number of extensions: 41 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 594 Length of database: 581 Length adjustment: 37 Effective length of query: 557 Effective length of database: 544 Effective search space: 303008 Effective search space used: 303008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate Dsui_1576 Dsui_1576 (dihydrolipoamide dehydrogenase)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.14895.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14895.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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