Align Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 (characterized)
to candidate Dsui_1443 Dsui_1443 phenylacetate-CoA ligase
Query= SwissProt::Q9L9C1 (440 letters) >FitnessBrowser__PS:Dsui_1443 Length = 438 Score = 594 bits (1531), Expect = e-174 Identities = 285/429 (66%), Positives = 350/429 (81%), Gaps = 3/429 (0%) Query: 12 EPIEKASQDELRALQLERLKWSVRHAYENVPHYRKAFDAKGVHPDDLKSLADLAKFPFTA 71 E I +AS+DE+ ALQL+RL+ S+RHAYE VPH R FDA GVHPDDLK+LADLA+FPFT Sbjct: 12 ERIARASRDEIAALQLKRLQQSLRHAYEKVPHTRAKFDAHGVHPDDLKTLADLARFPFTG 71 Query: 72 KGDLRDNYPFGMFAVPREKVARVHASSGTTGKPTVVGYTLKDIDTWATVVARSIRASGGR 131 K DLRDNYP+G+FAVP + RVHASSGTTGKPTVVGYT DID WA ++AR++RA+G Sbjct: 72 KQDLRDNYPYGLFAVPMRDIVRVHASSGTTGKPTVVGYTAGDIDRWADIMARALRAAGAG 131 Query: 132 AGDMVHIAYGYGLFTGGLGAHYGAEKLGCTVVPMSGGQTEKQIQLIQDFKPDIIMVTPSY 191 D+VH+A+GYGLFTGGLG HYG E+LG T VP+SGGQTE+Q+QLI DFKP +++VTPSY Sbjct: 132 PEDIVHVAHGYGLFTGGLGVHYGVERLGATAVPVSGGQTERQVQLIADFKPTVLVVTPSY 191 Query: 192 MLTVLDEMERMGIDPHQTSLKVGIFGAEPWTQAMRAAMEARAGIDAVDIYGLSEVMGPGV 251 L + DE E G D +SL++G+FGAEPW ++MRA +E R GI A+D+YGLSEVMGPGV Sbjct: 192 ALNLADECEHQGFDLAGSSLRIGLFGAEPWGESMRAEIERRFGIAAMDLYGLSEVMGPGV 251 Query: 252 ANECIEAKDGPVIWEDHFYPEIIDPHTGEVLPDGSEGELVFTTLTKEAMPVIRYRTRDLT 311 A+ECIE++DGP IWEDHFYPEIIDP+TGEVLPDG+ GELVFT+LTKE MPV+RYRTRDLT Sbjct: 252 ASECIESRDGPTIWEDHFYPEIIDPNTGEVLPDGAHGELVFTSLTKEGMPVVRYRTRDLT 311 Query: 312 RLLPPTARSMRRMAKITGRSDDMLIIRGVNLFPTQVEELICKNPKLAPQYLLEVDKDGHM 371 LLPPTARS RR+ KITGRSDDMLIIRGVN+FP+Q+EE + K +L+P Y LEV ++GH+ Sbjct: 312 TLLPPTARSFRRIGKITGRSDDMLIIRGVNVFPSQIEEFVLKQAELSPHYQLEVWREGHL 371 Query: 372 DTLTVKVEINPE-ANVGRHPEQKEALAKELQHDIKTFIGVSAKVHVCEPFAIERVTIGKA 430 D L ++VE+ PE AN G H E A+ELQH IK++IG+S +V V +IER GKA Sbjct: 372 DKLDIRVELKPEFANAGTH--VSEQAARELQHHIKSYIGISTRVRVEAVGSIERAVGGKA 429 Query: 431 KRVVDRRPK 439 +RVVD+RP+ Sbjct: 430 RRVVDKRPQ 438 Lambda K H 0.318 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 709 Number of extensions: 21 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 440 Length of database: 438 Length adjustment: 32 Effective length of query: 408 Effective length of database: 406 Effective search space: 165648 Effective search space used: 165648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate Dsui_1443 Dsui_1443 (phenylacetate-CoA ligase)
to HMM TIGR02155 (paaF: phenylacetate-CoA ligase (EC 6.2.1.30))
../bin/blast/fastacmd -i /tmp/list.7416.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7416.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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