Align acetate kinase (EC 2.7.2.1) (characterized)
to candidate Dsui_3033 Dsui_3033 acetate kinase
Query= BRENDA::G4T0C7 (401 letters) >FitnessBrowser__PS:Dsui_3033 Length = 397 Score = 279 bits (713), Expect = 1e-79 Identities = 167/405 (41%), Positives = 249/405 (61%), Gaps = 28/405 (6%) Query: 8 ILVINSGSSSIKYRLIALPQ------EQVLADGLLERIGEQESRIIHRADDSGR-LNEIK 60 +L +N+GSSSIK+ L L E VL+ G ++ IG + I DD G+ L+++ Sbjct: 5 VLTLNAGSSSIKFSLYELENGGGIAAEPVLS-GQIDGIGVKAH--IKAKDDKGKKLDDVD 61 Query: 61 ---QSVIAADHHQAFKAVFEILGEN---CSVDAIGHRVVHGGDRFSGPALVDDDTIASMR 114 Q + HH+A + + L ++ + A+GHRVVHGG+R+S P +DD+ I + Sbjct: 62 IPLQGDAESQHHEALEFLISWLHDHEKGWKIVAVGHRVVHGGERYSRPMKLDDNIIEHLT 121 Query: 115 ALCRIAPLHNPVNLLGIESCLAHFPGVPQVAVFDTAFHQTMPPHAYRYAIPETWYSDYGI 174 L +APLH P NL G+++ P VPQVA FDTAFH+T P A +A+P W + G+ Sbjct: 122 RLIPLAPLHQPHNLDGVDALRTMMPEVPQVACFDTAFHRTQAPVAQAFALPR-WITGEGV 180 Query: 175 RRFGFHGTSHHYVARRAAEFIGKPFDRSHLITLHLGNGASATAIANGRSVDTSMGFTPLE 234 +R+GFHG S+ Y+AR ++ P ++ HLGNGAS + + +S ++MGFT +E Sbjct: 181 KRYGFHGLSYEYIARVLPDY--SPRANGRVVVAHLGNGASMCGMVDRKSQVSTMGFTAVE 238 Query: 235 GLVMGTRSGDLDPAIPLFVEQTENTDTDAIDRALNRESGLKGLCGTN-DLRTVLEQTNAG 293 GL+MGTR+G LDP + L++ + + D A+ + L +ESGL G+ G + D+RT+L A Sbjct: 239 GLMMGTRTGALDPGVMLYLMENKGMDVKALTKLLYKESGLLGVSGISPDMRTLL----AS 294 Query: 294 DE-RARLALDLYCYRIKKYIGAYYAVLGEVDALVFTGGVGENAAEVRRLACEGLSRLGIA 352 D+ A+ A+DL+CYR+ + +G+ A +G +DALVFTGG+GE+AAEVRR C S LGI+ Sbjct: 295 DKPEAKEAVDLFCYRVVRELGSLAAAIGGIDALVFTGGIGEHAAEVRRRVCLQASWLGIS 354 Query: 353 IDEAANSDVTGAIAEIGLAESRTRILVIKTDEELQIAREAMAVLD 397 IDE+AN+ I+E S +LVI T+EE IAR +L+ Sbjct: 355 IDESANALHANRISE---PRSTVDVLVIPTNEEWMIARHTATLLN 396 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 441 Number of extensions: 22 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 397 Length adjustment: 31 Effective length of query: 370 Effective length of database: 366 Effective search space: 135420 Effective search space used: 135420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Dsui_3033 Dsui_3033 (acetate kinase)
to HMM TIGR00016 (ackA: acetate kinase (EC 2.7.2.1))
../bin/blast/fastacmd -i /tmp/list.17764.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17764.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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