Align arginine decarboxylase (EC 4.1.1.19) (characterized)
to candidate 5209141 Shew_1619 arginine decarboxylase (RefSeq)
Query= BRENDA::Q7MK24 (640 letters) >FitnessBrowser__PV4:5209141 Length = 637 Score = 873 bits (2255), Expect = 0.0 Identities = 426/624 (68%), Positives = 513/624 (82%), Gaps = 1/624 (0%) Query: 18 YNVHYWSQGFYGIDDQGEMYVSPRSDNA-HQIQLSKIVKQLEERQLNVPVLVRFPQILHQ 76 YNV+YWS G YGI + GE+ VSP ++ H I L+++ K + + + +PVLVRFPQILH Sbjct: 13 YNVNYWSSGLYGISEAGEVTVSPDPNHPEHTIGLNELAKDMVKSGVALPVLVRFPQILHH 72 Query: 77 RVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKP 136 RV+S+C+AFNQAI Y Y + YLLVYPIKVNQQ+ VV+EILASQ E QLGLEAGSKP Sbjct: 73 RVNSLCNAFNQAITRYDYQSDYLLVYPIKVNQQQTVVEEILASQVSKEVPQLGLEAGSKP 132 Query: 137 ELLAVLAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSL 196 EL+AVLAMAQ ASSVI+CNGYKD EYIRLALIGEKLGH+V+IVLEK+SEL +VL EAK L Sbjct: 133 ELMAVLAMAQKASSVIICNGYKDVEYIRLALIGEKLGHQVYIVLEKLSELKVVLEEAKKL 192 Query: 197 GVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHL 256 GVTPRLG+R+RLA QG GKWQASGGEKSKFGLSA+QVLNVI+ LK E+ LD+LQL+HFHL Sbjct: 193 GVTPRLGLRVRLAFQGKGKWQASGGEKSKFGLSAAQVLNVINSLKDEDMLDSLQLLHFHL 252 Query: 257 GSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQSSNSMNYGLV 316 GSQ+ANIRD+R+GV+E+ RFYCEL+ +GAN+ FDVGGGLA+DYDGTRSQSSNSMNYGL Sbjct: 253 GSQIANIRDIRSGVSEAGRFYCELQKMGANVKCFDVGGGLAVDYDGTRSQSSNSMNYGLT 312 Query: 317 EYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETVTEPEED 376 EYA NIV+ + D+C+++ QPMP +ISESGR LTAHHAVLI++VIGTE YKPE + P+E+ Sbjct: 313 EYANNIVSVLNDMCREHDQPMPRLISESGRYLTAHHAVLITDVIGTEAYKPEDLQAPDEE 372 Query: 377 FPLLLNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSL 436 P L NMW SW + D RALIEIY+D QSDLAEVHS FA G ++L RAWAEQ +L Sbjct: 373 APQQLKNMWDSWGEVSGRADQRALIEIYHDVQSDLAEVHSLFALGQMSLSDRAWAEQMNL 432 Query: 437 RIYYELNRLMSTKNRFHRPILDELSERLADKFFVNFSLFQSLPDSWGIDQVFPVLPLSGL 496 R+ YEL +MS K RFHRP++DEL+E+LADKFFVNFSLFQSLPD+WGIDQVFPV+PLSGL Sbjct: 433 RVCYELKGVMSGKYRFHRPVIDELNEKLADKFFVNFSLFQSLPDAWGIDQVFPVMPLSGL 492 Query: 497 QNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGAYQEILG 556 +RRAVMLDITCDSDG +D YVDGQGIE+TLPVPAW+ + PYL+GFFLVGAYQEILG Sbjct: 493 DKKPERRAVMLDITCDSDGTVDQYVDGQGIETTLPVPAWSAESPYLIGFFLVGAYQEILG 552 Query: 557 DMHNLFGDTHSVVVNVGDQGEINIDFINEGDTVEDMMRYVHIDVDQIRKNYHSLVSQRVD 616 DMHNLFGDT+S VV + D G +NI+ + GDTV D++RYV++D + Y LV+ + Sbjct: 553 DMHNLFGDTNSAVVRLDDDGLVNIESVLAGDTVADVLRYVNLDAVSFMRTYEELVNLHIQ 612 Query: 617 QEEQQQILAELEQGLSGYTYLEDF 640 ++E+ IL EL+ GL GYTYLEDF Sbjct: 613 EDERANILEELQIGLKGYTYLEDF 636 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1191 Number of extensions: 49 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 640 Length of database: 637 Length adjustment: 38 Effective length of query: 602 Effective length of database: 599 Effective search space: 360598 Effective search space used: 360598 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate 5209141 Shew_1619 (arginine decarboxylase (RefSeq))
to HMM TIGR01273 (speA: arginine decarboxylase (EC 4.1.1.19))
../bin/blast/fastacmd -i /tmp/list.7918.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7918.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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