Align phosphoglucomutase; EC 5.4.2.2 (characterized)
to candidate 5209451 Shew_1922 phosphoglucomutase (RefSeq)
Query= CharProtDB::CH_002452 (546 letters) >FitnessBrowser__PV4:5209451 Length = 559 Score = 636 bits (1641), Expect = 0.0 Identities = 317/558 (56%), Positives = 400/558 (71%), Gaps = 15/558 (2%) Query: 1 MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAARHSFNEPH 60 MA+H RAG+PAQQ DL+N+ +L + YY L P+ N V FGTSGHRG A SFNE H Sbjct: 1 MALHERAGKPAQQRDLVNIPKLMSHYYRLSPDVTNDAQKVTFGTSGHRGCAFNKSFNEKH 60 Query: 61 ILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPT 120 ILAI QA+ + R + GI GP VG DTHALS+ A+++ LEVL ANGV VIV +N+ +TPT Sbjct: 61 ILAIVQAVVDHRIEAGIKGPMIVGIDTHALSQAAYVTALEVLTANGVQVIVAKNDEYTPT 120 Query: 121 PAVSNAILVHNKKGGP---------LADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTK 171 P VS+AI+ N+ G L DG++ITPSHNPP+DGGIKYNPP+GGPA+ +T Sbjct: 121 PVVSHAIIAANRVQGAGLTYGLNYGLTDGLIITPSHNPPQDGGIKYNPPHGGPAEGGITA 180 Query: 172 VVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADIVDMAAIQKAGLTL 231 VE RAN LA L+GVKR++ A+ + ++E+DL+ +VE L ++DM AI++AG+ + Sbjct: 181 WVEQRANEYLAKQLEGVKRLTYSVAVTTSLIQERDLMAAYVEDLEQVIDMQAIKQAGIRI 240 Query: 232 GVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLL 291 GVDPLGGSGI YW +I E Y L++T+VND++D F FM LDKDG IRMDCSS AMAGLL Sbjct: 241 GVDPLGGSGIHYWAKIAERYGLDITLVNDRIDPAFGFMPLDKDGKIRMDCSSPYAMAGLL 300 Query: 292 ALRDKFDLAFANDPDYDRHGIVTP-AGLMNPNHYLAVAINYLFQHRPQWGKDVAVGKTLV 350 +D FD+ F NDPDYDRHGIV P +GLMNPNHYLAVAI YL HRPQW D+ +GKTLV Sbjct: 301 VHQDAFDICFGNDPDYDRHGIVCPGSGLMNPNHYLAVAIEYLLSHRPQWSADLKIGKTLV 360 Query: 351 SSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKD 410 SSAMID+V + R L EVPVGFKWFV+GL D SF FGGEESAGA+FLR DG W TDKD Sbjct: 361 SSAMIDKVCREQSRSLCEVPVGFKWFVEGLADASFAFGGEESAGAAFLRRDGGSWCTDKD 420 Query: 411 GIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQAAATSAQKAALSKLSPEMVSA 470 G I+ LLAAEI AVTGK P + Y E+ +R G Y R+ + +KA ++L E ++ Sbjct: 421 GFILALLAAEILAVTGKTPAKLYAEMVERHGESFYKRIDSPVNPKRKAKFNQLVSEPLNV 480 Query: 471 STL-----AGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGE 525 S L AGD I LT APGNGA+IGG+KV+T+ WFAARPSGTE +K+Y ESF+ E Sbjct: 481 SDLGCEAMAGDAILEVLTHAPGNGAAIGGIKVVTEKAWFAARPSGTEALFKLYGESFVSE 540 Query: 526 EHRKQIEKEAVEIVSEVL 543 H +Q+ ++A +++ +L Sbjct: 541 AHLEQVLEQAQQMIERLL 558 Lambda K H 0.316 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 925 Number of extensions: 36 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 546 Length of database: 559 Length adjustment: 36 Effective length of query: 510 Effective length of database: 523 Effective search space: 266730 Effective search space used: 266730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate 5209451 Shew_1922 (phosphoglucomutase (RefSeq))
to HMM TIGR01132 (pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific (EC 5.4.2.2))
../bin/blast/fastacmd -i /tmp/list.4654.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4654.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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