Align Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 (characterized)
to candidate 5207682 Shew_0204 ornithine carbamoyltransferase (RefSeq)
Query= SwissProt::Q9K4Y9 (301 letters) >FitnessBrowser__PV4:5207682 Length = 301 Score = 389 bits (1000), Expect = e-113 Identities = 180/300 (60%), Positives = 242/300 (80%) Query: 1 MENLLSVKDLSKQQILDLLALAKAVKANPAEYSQALAGKSIVTIYEKPSLRTRVTFDIGI 60 M +LLS+K+L++QQ++DLLALAK +KANP +Y +AL GKS+V ++EKPSLRTRV+FDIGI Sbjct: 1 MNHLLSIKELTQQQLIDLLALAKTIKANPEDYRKALDGKSVVMLFEKPSLRTRVSFDIGI 60 Query: 61 HKLGGHAVYLDAQNGAIGERETVKDFAANISRWADAIVARVVSHKTLEGLVEHGSVPVVN 120 +KLGGH +YLD QNGA+G+RE V DFAANIS WADAIVAR +H T+E L EHG+VPV+N Sbjct: 61 NKLGGHCLYLDQQNGALGKREPVSDFAANISCWADAIVARTFAHSTIEQLAEHGTVPVIN 120 Query: 121 SLCDLYHPCQALADFLTISEHYEDVSKVKLAYVGEGNNVTHSLMLTGAILGAEVTAVCPR 180 +L D+YHPCQ LADFLT++E ++DVSKVKLAYVG+GNNVTHSLM A+LGA++T +CP+ Sbjct: 121 ALSDMYHPCQGLADFLTLAEQFDDVSKVKLAYVGDGNNVTHSLMYGAALLGAKMTVICPQ 180 Query: 181 GSSPDAQIVKQAMALAEISGGKINVTDNLDDIVDYDVIYGDTWVSMGDDTPLAQVKEKYM 240 G PD ++V +A A+AE GG++ ++ +++ I +D IY DTW+SMGD L ++K K+ Sbjct: 181 GHFPDGKVVLEAQAIAEAHGGELVLSSDVEAIAGHDAIYTDTWISMGDKASLDEIKAKFA 240 Query: 241 PYQINKALLMRTGIKHVLHCQPAHRELEITSEVMDGEHSLIFDQAENRMHAQNAVLLTLL 300 PY ++ ++ + G K +HC PA+R +E+ +EV+DG SLI QAENRMHAQNAVL+TLL Sbjct: 241 PYHVDTDMMNKAGAKFFMHCLPAYRGVEVAAEVVDGAGSLILQQAENRMHAQNAVLVTLL 300 Lambda K H 0.317 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 261 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 301 Length of database: 301 Length adjustment: 27 Effective length of query: 274 Effective length of database: 274 Effective search space: 75076 Effective search space used: 75076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate 5207682 Shew_0204 (ornithine carbamoyltransferase (RefSeq))
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.22296.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22296.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.