Align Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) (characterized)
to candidate 5208068 Shew_0580 succinylglutamic semialdehyde dehydrogenase (RefSeq)
Query= reanno::MR1:199807 (487 letters) >FitnessBrowser__PV4:5208068 Length = 487 Score = 857 bits (2215), Expect = 0.0 Identities = 418/486 (86%), Positives = 451/486 (92%) Query: 1 MTHFIKGQWHTGKGHDVASSNPANGEIIWRGQTATAEQVNAAVDAAREAQFDWFILGFDA 60 M+ FI GQW G GHDV S NPAN E+IW +TAT EQVNAAV+AAR AQFDWF+LGFDA Sbjct: 2 MSQFINGQWVAGLGHDVVSKNPANQEVIWESKTATPEQVNAAVEAARAAQFDWFMLGFDA 61 Query: 61 RLKIVEAYRSQLEANKAELAETIAQETGKPQWETATEVAAMIGKIGLSASAYNKRTGTET 120 RL IVEAYR QLEA+K ++AE IAQETGKPQWETATE AMIGKIGLS +AY+KRTGT Sbjct: 62 RLAIVEAYRDQLEAHKGDIAEVIAQETGKPQWETATEAGAMIGKIGLSVAAYHKRTGTSE 121 Query: 121 NDTPAGRAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNSVVFKPSELTPKVAELM 180 NDTPAGRAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGN+VVFKPSELTPK AELM Sbjct: 122 NDTPAGRAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKTAELM 181 Query: 181 VTLWEKSGLPAGVLNLVQGEVDTGKALASHPQLDGLFFTGSSRTGHLLHQQYAGHPGKIL 240 + LWEK+GLPAGV+NLVQGEV+TGKALASHPQ+DGLFFTGSSRTGH+LHQQYAGHPGKIL Sbjct: 182 LKLWEKAGLPAGVINLVQGEVETGKALASHPQIDGLFFTGSSRTGHILHQQYAGHPGKIL 241 Query: 241 ALEMGGNNPLIIKGVADIKAAVHDILQSAYISSGQRCTCARRLYVEQGEQGDALVAKLVE 300 ALEMGGNNPLIIKGV D AAVHDI+QSAYISSGQRCTCARRLYVE+G +GDAL+AKL E Sbjct: 242 ALEMGGNNPLIIKGVKDTLAAVHDIIQSAYISSGQRCTCARRLYVEKGAEGDALLAKLAE 301 Query: 301 AVKQIKVGPWNAQPQPFMGSMISEAAAKGMVAAQANLLSLGGVPLVELMHLQAGTGLVSP 360 AVKQIKVGPWNAQPQPFMGSMISEAAAKGMV AQ NL++LGG PLVEL HL+AGTGLVSP Sbjct: 302 AVKQIKVGPWNAQPQPFMGSMISEAAAKGMVEAQRNLINLGGTPLVELKHLEAGTGLVSP 361 Query: 361 GLIDVTAVSELPDEEYFGPLLQLVRYSDFDQAIKLANQTRYGLSAGILADSREDYEYFLA 420 GLIDVT V ELPDEEYFGPLLQ+VRY+DFD+AIKLAN TRYGLSAGILADSREDY+YFLA Sbjct: 362 GLIDVTQVIELPDEEYFGPLLQVVRYTDFDEAIKLANDTRYGLSAGILADSREDYDYFLA 421 Query: 421 RIRAGIVNWNKQITGASGAAPFGGVGASGNHRASAFYAADYCAYPVASVEADAVSLPATL 480 RIRAGIVNWNKQITGASG+APFGGVGASGNHRASAFYAADYCAYPVASVEADA+++PA+L Sbjct: 422 RIRAGIVNWNKQITGASGSAPFGGVGASGNHRASAFYAADYCAYPVASVEADALAMPASL 481 Query: 481 SPGLTL 486 SPGLTL Sbjct: 482 SPGLTL 487 Lambda K H 0.316 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 985 Number of extensions: 29 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 487 Length of database: 487 Length adjustment: 34 Effective length of query: 453 Effective length of database: 453 Effective search space: 205209 Effective search space used: 205209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate 5208068 Shew_0580 (succinylglutamic semialdehyde dehydrogenase (RefSeq))
to HMM TIGR03240 (astD: succinylglutamate-semialdehyde dehydrogenase (EC 1.2.1.71))
../bin/blast/fastacmd -i /tmp/list.21160.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21160.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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