Align deoxyribose-phosphate aldolase (EC 4.1.2.4) (characterized)
to candidate 5210372 Shew_2815 deoxyribose-phosphate aldolase (RefSeq)
Query= BRENDA::P0A6L0 (259 letters) >FitnessBrowser__PV4:5210372 Length = 257 Score = 343 bits (881), Expect = 2e-99 Identities = 179/248 (72%), Positives = 206/248 (83%), Gaps = 3/248 (1%) Query: 1 MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTL 60 M+DLK ++ +A++LMDLTTLNDDDTD+KVI LCH+AKTP GNTAAICIYPRFIPIARKTL Sbjct: 1 MSDLKKAAQKAIELMDLTTLNDDDTDQKVIELCHKAKTPAGNTAAICIYPRFIPIARKTL 60 Query: 61 KEQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFD 120 E G EI+IATVTNFPHGNDDI IA+ ETRAA+AYGADEVDVVFPYRALM GNE VG++ Sbjct: 61 NEMGCEEIKIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGYE 120 Query: 121 LVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPE 180 LVKACKEAC +VLLKVIIE+G L+D ALIRKASE+SI AGADFIKTSTGKV VNAT E Sbjct: 121 LVKACKEAC-GDDVLLKVIIESGVLQDPALIRKASELSIDAGADFIKTSTGKVEVNATLE 179 Query: 181 SARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSL 240 +A IMM VI + + VGFKPAGGVR A A+++L +A+ L G WA R +RFGASSL Sbjct: 180 AAEIMMTVIAEKNPK--VGFKPAGGVRDAAAAEEFLGVAERLLGKGWATPRTFRFGASSL 237 Query: 241 LASLLKAL 248 L +LL L Sbjct: 238 LNNLLHTL 245 Lambda K H 0.317 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 242 Number of extensions: 5 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 259 Length of database: 257 Length adjustment: 24 Effective length of query: 235 Effective length of database: 233 Effective search space: 54755 Effective search space used: 54755 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 47 (22.7 bits)
Align candidate 5210372 Shew_2815 (deoxyribose-phosphate aldolase (RefSeq))
to HMM TIGR00126 (deoC: deoxyribose-phosphate aldolase (EC 4.1.2.4))
../bin/blast/fastacmd -i /tmp/list.16549.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16549.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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