GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Shewanella loihica PV-4

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate 5209946 Shew_2394 phosphate acetyltransferase (RefSeq)

Query= BRENDA::P0A9M8
         (714 letters)



>FitnessBrowser__PV4:5209946
          Length = 712

 Score =  966 bits (2496), Expect = 0.0
 Identities = 479/712 (67%), Positives = 590/712 (82%), Gaps = 1/712 (0%)

Query: 1   MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRTGGDAPDQTTTIVRAN 60
           MSR IMLIP GT VGLTS+SLG++RA+ER GV++  FKPIAQ R     P+++TTI+ + 
Sbjct: 1   MSRNIMLIPNGTGVGLTSISLGMVRALERHGVKVRFFKPIAQQRPTDKGPERSTTIL-SK 59

Query: 61  SSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDAEVVLVEGLVPTRKHQFAQ 120
           S T    EP  M++ E L+ ++Q DVLME+I+A        +E ++VEGLV TR H F+ 
Sbjct: 60  SPTVNPLEPFDMAHAEHLIRTDQTDVLMEQIIARATECADPSETLIVEGLVQTRNHPFSD 119

Query: 121 SLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFGGAKNTNITGVIVNKLNAPVD 180
            +NYEIAK L+A+I+FV + G +TP  L  R+E+  N++GG+KN  + G I+NK+ APVD
Sbjct: 120 DINYEIAKALDADIIFVAAPGNETPTALMNRLEIAHNAWGGSKNKRLIGAIINKIGAPVD 179

Query: 181 EQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVLGAVPWSFDLIATRAIDMARHLN 240
           ++GR RPDLSE+FD     + +     +L   S L +LG+VP++ +L+A RA D+A+HL+
Sbjct: 180 DEGRARPDLSEVFDHQDVQRPDAASMFQLPGKSKLRILGSVPYNLNLVAPRASDLAKHLS 239

Query: 241 ATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSLLVTSADRPDVLVAACLAAMNGVEI 300
           A IIN G++NTRR++ VTFCARSIP+M+ H +  SLLVTS DR DV+V+ACLAAMNGV++
Sbjct: 240 ARIINAGEMNTRRLRKVTFCARSIPNMVTHIKTDSLLVTSGDRSDVIVSACLAAMNGVKV 299

Query: 301 GALLLTGGYEMDARISKLCERAFATGLPVFMVNTNTWQTSLSLQSFNLEVPVDDHERIEK 360
           GALLLTG YE +  I  LCE+AF TGLPVF+++TNTWQTSL++Q F+ EVPVDD  RIE+
Sbjct: 300 GALLLTGSYEPEPEIMALCEQAFETGLPVFLIDTNTWQTSLNIQRFDHEVPVDDAVRIEE 359

Query: 361 VQEYVANYINADWIESLTATSERSRRLSPPAFRYQLTELARKAGKRIVLPEGDEPRTVKA 420
           VQEYVA++I+  W+ES+T  S R  RLSPPAFRY+LTELAR A K +VLPEGDEPRT++A
Sbjct: 360 VQEYVASHIDQSWVESVTMNSPREHRLSPPAFRYKLTELARAAAKTVVLPEGDEPRTIEA 419

Query: 421 AAICAERGIATCVLLGNPAEINRVAASQGVELGAGIEIVDPEVVRESYVGRLVELRKNKG 480
           AAICAERGIA CVL+GNP EI R+A+ QGV LG G+EI++PE  RE YV  +VELR++KG
Sbjct: 420 AAICAERGIARCVLIGNPEEIQRIASQQGVTLGEGVEIIEPETARERYVAPMVELRRHKG 479

Query: 481 MTETVAREQLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSV 540
           MTE VAREQLEDN+VLGT+ML Q EVDG+VSGAV+TTANTIRPPLQLIKTAPGSSLVSS+
Sbjct: 480 MTEVVAREQLEDNMVLGTMMLAQGEVDGIVSGAVNTTANTIRPPLQLIKTAPGSSLVSSI 539

Query: 541 FFMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGS 600
           FFML+P+QV VYGDCAINPDP AEQLA+IAIQSADSAAAFGIEP+VAM+SYSTG+SG GS
Sbjct: 540 FFMLMPDQVLVYGDCAINPDPNAEQLADIAIQSADSAAAFGIEPKVAMISYSTGSSGTGS 599

Query: 601 DVEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTG 660
           DV+KVREATR+A+EKRP+L+IDGPLQYDAAVM +VA+SKAPNSPVAG+ATVF+FPDLNTG
Sbjct: 600 DVDKVREATRIAKEKRPELVIDGPLQYDAAVMPNVAQSKAPNSPVAGQATVFVFPDLNTG 659

Query: 661 NTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQSAQ 712
           NTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQ++Q
Sbjct: 660 NTTYKAVQRSADLISIGPMLQGMRKPVNDLSRGALVDDIVYTIALTAIQASQ 711


Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1362
Number of extensions: 41
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 712
Length adjustment: 39
Effective length of query: 675
Effective length of database: 673
Effective search space:   454275
Effective search space used:   454275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Align candidate 5209946 Shew_2394 (phosphate acetyltransferase (RefSeq))
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.16756.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16756.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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