Align phosphogluconate dehydratase (characterized)
to candidate 5209582 Shew_2046 phosphogluconate dehydratase (RefSeq)
Query= CharProtDB::CH_024239 (603 letters) >FitnessBrowser__PV4:5209582 Length = 608 Score = 805 bits (2079), Expect = 0.0 Identities = 399/602 (66%), Positives = 486/602 (80%) Query: 1 MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGNLAHGFAACQPEDKASL 60 M+ + VT+RII RS+ TR+ YLA + +AK + VHRS L+CGNLAHGFAAC P DK ++ Sbjct: 1 MHSVVQSVTDRIIARSQATRAKYLAALGEAKANGVHRSSLSCGNLAHGFAACSPADKNAI 60 Query: 61 KSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVGQVAGGVPAMCDGVTQGQD 120 K+ + NI I+T++NDMLSAHQPYEHYP++++ A HE +V QVA GVPAMCDGVTQGQ Sbjct: 61 KAFNKANIGIVTAFNDMLSAHQPYEHYPQLLKDACHEVGSVAQVAAGVPAMCDGVTQGQP 120 Query: 121 GMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLTMAALSFGHLPAVFVPSGP 180 GMELSLLSREVIAMS AVGLSHNMFDGAL LG+CDKIVPGL + ALSFGHLP +FVP+GP Sbjct: 121 GMELSLLSREVIAMSTAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGP 180 Query: 181 MASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQ 240 M SG+PNKEK R+RQ +A+G+VDR ALLE+E+ SYH+ GTCTFYGTAN+NQ+++E MG+Q Sbjct: 181 MKSGIPNKEKARVRQKFAQGQVDRAALLEAESKSYHSAGTCTFYGTANSNQLMLEVMGLQ 240 Query: 241 LPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWMPIGKMIDEKVVVNGIVALLATGGS 300 LPGSSFV+PD PLR+AL AA+QV R+T G ++ PIG++++EK VVNGIVALLATGGS Sbjct: 241 LPGSSFVNPDDPLREALNKMAAKQVCRLTEMGTQYTPIGEVVNEKSVVNGIVALLATGGS 300 Query: 301 TNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMARLYPNGPADINHFQAAGGVPVLVREL 360 TN TMH+VA ARAAGI +NWDDFS+LSD VPL+AR+YPNG ADINHF AAGG+ L++EL Sbjct: 301 TNLTMHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKEL 360 Query: 361 LKAGLLHEDVNTVAGFGLSRYTLEPWLNNGELDWREGAEKSLDSNVIASFEQPFSHHGGT 420 L AGLLHEDV TVAG GL RYT EP L + EL W EG +SLD V+ + PF +GG Sbjct: 361 LDAGLLHEDVLTVAGPGLRRYTQEPRLIDNELVWVEGPNESLDKEVLTAVASPFQANGGL 420 Query: 421 KVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVMPAFEAGLLDRDCVVVVRHQGPK 480 K+L GNLGRAV+K SAV ++ +EAPAVV + Q+ + F+AG LDRDCVVVV+ QGPK Sbjct: 421 KLLKGNLGRAVIKVSAVAESHRFVEAPAVVIDDQNKLEGLFKAGELDRDCVVVVKGQGPK 480 Query: 481 ANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRD 540 ANGMPELHKL P LG L D+ FK+AL+TDGR+SGASGKVP+AIH+TPEA DGGL+AKV + Sbjct: 481 ANGMPELHKLTPILGSLQDKGFKVALLTDGRMSGASGKVPAAIHLTPEALDGGLIAKVEN 540 Query: 541 GDIIRVNGQTGELTLLVDEAELAAREPHIPDLSASRVGTGRELFSALREKLSGAEQGATC 600 GD+IRV+ TGE++LLVDEA LA+RE DL ++ G GRELF+ALR LS E GA C Sbjct: 541 GDLIRVDANTGEVSLLVDEAVLASREVEKVDLRSTSFGMGRELFAALRSNLSSPETGARC 600 Query: 601 IT 602 T Sbjct: 601 TT 602 Lambda K H 0.318 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1067 Number of extensions: 34 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 603 Length of database: 608 Length adjustment: 37 Effective length of query: 566 Effective length of database: 571 Effective search space: 323186 Effective search space used: 323186 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate 5209582 Shew_2046 (phosphogluconate dehydratase (RefSeq))
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.5657.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5657.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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