Align glycerol kinase; EC 2.7.1.30 (characterized)
to candidate 5211050 Shew_3466 glycerol kinase (RefSeq)
Query= CharProtDB::CH_121461 (502 letters) >FitnessBrowser__PV4:5211050 Length = 498 Score = 724 bits (1870), Expect = 0.0 Identities = 338/489 (69%), Positives = 414/489 (84%), Gaps = 1/489 (0%) Query: 3 EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLV 62 ++KY++ALDQGTTSSR ++ DHDAN++++SQREF QIYPK GWVEHDPMEIWA+QSSTL+ Sbjct: 2 QQKYVIALDQGTTSSRTIIFDHDANVVAISQREFSQIYPKVGWVEHDPMEIWASQSSTLI 61 Query: 63 EVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE 122 E LA+A I SD++A+IGITNQRETT++W+K TGKPIYNAIVWQCRR+ +CE L+ +G E Sbjct: 62 EALARAGIHSDEVASIGITNQRETTVLWDKATGKPIYNAIVWQCRRSQPLCESLRAEGYE 121 Query: 123 DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVT 182 DYIR NTGLV+DPYFS TK++WILD+VEG+RE+A GELLFGT+DTWL+WK+T+G+VHVT Sbjct: 122 DYIRQNTGLVLDPYFSATKIRWILDNVEGAREKAEAGELLFGTIDTWLVWKLTEGKVHVT 181 Query: 183 DYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISG 242 D TNASRTML+NIH WD +LE L+IP +LPEV+ S VYG+T I G+GG IP++G Sbjct: 182 DPTNASRTMLYNIHQQAWDPVLLEALEIPASILPEVKPSCAVYGKTRIAGEGG-EIPVAG 240 Query: 243 IAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYA 302 +AGDQQ+ALFGQLC+ EGMAKNTYGTGCF+LMNTG +AV+S +GLLTTIA GP GEVNYA Sbjct: 241 MAGDQQSALFGQLCIDEGMAKNTYGTGCFLLMNTGLQAVQSNHGLLTTIAVGPKGEVNYA 300 Query: 303 LEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYAR 362 LEG+VFM GA+IQWLRDE+ LI DA D+EYFA KV + NGVY+VPAF GLGAPYWD AR Sbjct: 301 LEGSVFMGGATIQWLRDELGLIRDAQDTEYFALKVSDNNGVYLVPAFVGLGAPYWDASAR 360 Query: 363 GAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQF 422 GA+ GL+RG N NHIIRA LE+IAYQ+RD+L+AM DSG++L L+VDGGAVAN+FLMQF Sbjct: 361 GALVGLSRGANRNHIIRAALEAIAYQSRDLLDAMTKDSGVQLKQLKVDGGAVANDFLMQF 420 Query: 423 QSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNY 482 Q+DI V+RP+V E TA+GAA+LAGLAVGFWQ+ EL+ KA +ER F+P I ER Sbjct: 421 QADITDVEVQRPKVTETTAMGAAFLAGLAVGFWQSTAELKHKAGVERCFKPAIADDEREA 480 Query: 483 RYAGWKKAV 491 Y GWK+AV Sbjct: 481 LYLGWKRAV 489 Lambda K H 0.318 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 814 Number of extensions: 22 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 502 Length of database: 498 Length adjustment: 34 Effective length of query: 468 Effective length of database: 464 Effective search space: 217152 Effective search space used: 217152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate 5211050 Shew_3466 (glycerol kinase (RefSeq))
to HMM TIGR01311 (glpK: glycerol kinase (EC 2.7.1.30))
../bin/blast/fastacmd -i /tmp/list.18164.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18164.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.