Align UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) (characterized)
to candidate 5209832 Shew_2285 UDP-glucose 4-epimerase (RefSeq)
Query= metacyc::BSU38860-MONOMER (339 letters) >FitnessBrowser__PV4:5209832 Length = 351 Score = 400 bits (1028), Expect = e-116 Identities = 196/335 (58%), Positives = 243/335 (72%) Query: 1 MAILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLL 60 M+ILVTGGAGYIGSH CVELL++G+++VVLDNLS + E+L RV++IT LTF E D+ Sbjct: 16 MSILVTGGAGYIGSHACVELLSAGHQLVVLDNLSRAKFESLARVEQITAAKLTFVEGDIR 75 Query: 61 DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIV 120 D +D++F+ I+AV+HFAGLKAVGES +PL+YY NN+ G+ L AM ++GVK +V Sbjct: 76 DERTLDALFSHYHIDAVMHFAGLKAVGESTRLPLEYYDNNVVGSMRLLSAMTRHGVKTLV 135 Query: 121 FSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPF 180 FSSSATVYG PI E P +TNPYGQTKL++EQ+ + A + SV LLRYFNP Sbjct: 136 FSSSATVYGANPPLPIMEAAPRSSTNPYGQTKLVVEQMCAEWANAKQDVSVILLRYFNPV 195 Query: 181 GAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAE 240 GAH SG IGEDP G PNNL+PY+ QVA+G LSVFG+DY T DGTGVRDYIHV+DL + Sbjct: 196 GAHESGLIGEDPKGEPNNLLPYITQVAMGHRPYLSVFGSDYATTDGTGVRDYIHVMDLVQ 255 Query: 241 GHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFA 300 GH+ AL ++ G +NLG+G GYSVLEMV+AFE+ SGK++ A RRPGDIA +A Sbjct: 256 GHLAALTRLHGVAGCHTFNLGSGQGYSVLEMVRAFEQASGKDIALHMAPRRPGDIAASYA 315 Query: 301 DPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGY 335 P KA REL W R L +M DSWRWQ N GY Sbjct: 316 CPDKAARELDWRVARDLSQMMQDSWRWQCRNPRGY 350 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 423 Number of extensions: 11 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 339 Length of database: 351 Length adjustment: 29 Effective length of query: 310 Effective length of database: 322 Effective search space: 99820 Effective search space used: 99820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate 5209832 Shew_2285 (UDP-glucose 4-epimerase (RefSeq))
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.24970.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24970.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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