Align glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 (characterized)
to candidate 5210634 Shew_3062 glycine dehydrogenase (RefSeq)
Query= CharProtDB::CH_003480 (957 letters) >FitnessBrowser__PV4:5210634 Length = 962 Score = 1325 bits (3430), Expect = 0.0 Identities = 643/961 (66%), Positives = 787/961 (81%), Gaps = 6/961 (0%) Query: 2 TQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQIVPKDIQLATPPQVGAP 61 T+TL+QLE FI RHIGPD+A QQEMLN VGA+SL LT QIVP+ I+L VG+ Sbjct: 3 TETLTQLEQHELFIRRHIGPDSADQQEMLNFVGAESLEDLTQQIVPESIRLGRDLAVGSA 62 Query: 62 ATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNMLENPGWYTAYTPYQPEVSQ 121 E LA ++ A +NK F SYIGMGY +P VI RN+ ENPGWYTAYTPYQPE++Q Sbjct: 63 CGEAEGLASIRKYADKNKVFKSYIGMGYYGTIVPSVIQRNVFENPGWYTAYTPYQPEIAQ 122 Query: 122 GRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAMAKRVSKLKNANRFFVASDVHP 181 GRLEA+LNFQQ+++DLTGLD+ASASLLDEATAAAEAMA+AKRVSK K AN FF+A DV P Sbjct: 123 GRLEAILNFQQLSMDLTGLDLASASLLDEATAAAEAMALAKRVSKAKKANIFFIADDVFP 182 Query: 182 QTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQQVGTTGEIHDYTALISELKSRKI 241 QT+DVV+TRAE FGFE++V A + ++++ +FG L Q G+I D+T L + L+ +K Sbjct: 183 QTIDVVKTRAECFGFEIVVGPASEAVNYE-LFGALFQYTNHYGQITDFTELFAALQEKKA 241 Query: 242 VVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEYKRSMPGRI 301 VV+VAADIM+LV L +PG GAD+VFGSAQRFGVPMG+GGPHAAFF +D++KRS+PGRI Sbjct: 242 VVTVAADIMSLVSLKSPGSMGADVVFGSAQRFGVPMGFGGPHAAFFVTRDQHKRSLPGRI 301 Query: 302 IGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVYHGPVGLKRIA 361 IGVS+D GN ALRMAMQTREQHIRREKANSNICT+QVLLAN+AS YAV+HGP GLK IA Sbjct: 302 IGVSQDTRGNRALRMAMQTREQHIRREKANSNICTAQVLLANMASFYAVFHGPQGLKIIA 361 Query: 362 NRIHRLTDILAAGLQQKGLKLRHAHYFDTLCVEVADKAGVLTRAEAAEINLRSDILNAVG 421 +RIHRL DI AAGL+ KG++L + +FDT+ +VAD A RA A E+NLR D +G Sbjct: 362 DRIHRLADIFAAGLKAKGVELVNNTWFDTVSFKVADSAAAQARAIAGEVNLRIDSDGILG 421 Query: 422 ITLDETTTRENVMQLFNVLLGDNHGLDIDTLDKDV-AHDSRSIQPAMLRDDEILTHPVFN 480 + + ETTTRE+V QLF+++LG+ HGLD+ +D D+ A+ S SI ++R D IL HP FN Sbjct: 422 VAMAETTTREDVAQLFDIVLGEGHGLDVAAIDADIIANGSNSIPAELVRQDAILEHPTFN 481 Query: 481 RYHSETEMMRYMHSLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPPE 540 RYHSETEMMRY+ LE KDLALN +MI LGSCTMKLNAA EM+P++WPEF +HPFCP + Sbjct: 482 RYHSETEMMRYIKRLENKDLALNHSMISLGSCTMKLNAATEMMPVSWPEFGNMHPFCPQD 541 Query: 541 QAEGYQQMIAQLADWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLI 600 QA+GY ++I +L++WLV +TGYDA+CMQPNSGA GEYAGLLAI+ YHESR EGHR++CLI Sbjct: 542 QAQGYAELIEELSNWLVDITGYDAMCMQPNSGASGEYAGLLAIKKYHESRGEGHRNVCLI 601 Query: 601 PASAHGTNPASAHMAGMQVVVVACDKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVY 660 P SAHGTNPASA +AGM++VV ACDK GN+D+ DL+AKA + +NLSCIMVTYPSTHGVY Sbjct: 602 PQSAHGTNPASAQLAGMKIVVTACDKQGNVDMEDLKAKAAEVAENLSCIMVTYPSTHGVY 661 Query: 661 EETIREVCEVVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPG 720 EETI E+CEV+HQ GGQVYLDGANMNAQVG+TSPG IGADVSHLNLHKTF IPHGGGGPG Sbjct: 662 EETISEICEVIHQHGGQVYLDGANMNAQVGLTSPGSIGADVSHLNLHKTFAIPHGGGGPG 721 Query: 721 MGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKK 780 MGPIGVKAHLAPFV GH+VV+ GAVSAAP+GSASILPI+WMYI+++G +GL++ Sbjct: 722 MGPIGVKAHLAPFVAGHAVVKHGRESDNNGAVSAAPYGSASILPITWMYIKLLGYQGLRQ 781 Query: 781 ASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDY 840 ++Q+A+LNANY+ +L +PVLYTGR+ RVAHECI+D+RPLKE +G++E+DIAKRL DY Sbjct: 782 STQMALLNANYVMKKLSAHYPVLYTGRNDRVAHECIIDLRPLKEASGVTEMDIAKRLNDY 841 Query: 841 GFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNA 900 GFHAPTMSFPVAGTLM+EPTESESK ELDRFI+AM+AIR EI +V+AG WP ++NPL NA Sbjct: 842 GFHAPTMSFPVAGTLMIEPTESESKAELDRFIEAMVAIRGEIAKVEAGEWPADNNPLHNA 901 Query: 901 PHIQSELV-AEW-AHPYSREVAVFPAGV--ADKYWPTVKRLDDVYGDRNLFCSCVPISEY 956 PH ++++ +E+ + PYSRE AVFP A+K+WPTV R+DDVYGDRNL CSC PI +Y Sbjct: 902 PHTMADIMDSEFDSRPYSRETAVFPTAAVKANKFWPTVNRIDDVYGDRNLMCSCAPIDDY 961 Query: 957 Q 957 + Sbjct: 962 K 962 Lambda K H 0.319 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2256 Number of extensions: 82 Number of successful extensions: 7 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 957 Length of database: 962 Length adjustment: 44 Effective length of query: 913 Effective length of database: 918 Effective search space: 838134 Effective search space used: 838134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)
Align candidate 5210634 Shew_3062 (glycine dehydrogenase (RefSeq))
to HMM TIGR00461 (gcvP: glycine dehydrogenase (EC 1.4.4.2))
../bin/blast/fastacmd -i /tmp/list.21031.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21031.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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