Align Maleylacetoacetate isomerase (EC 5.2.1.2) (characterized)
to candidate 5208938 Shew_1439 maleylacetoacetate isomerase (RefSeq)
Query= reanno::MR1:200836 (216 letters) >FitnessBrowser__PV4:5208938 Length = 214 Score = 298 bits (764), Expect = 4e-86 Identities = 145/215 (67%), Positives = 172/215 (80%), Gaps = 2/215 (0%) Query: 1 MILYGYWRSSAAYRVRIALNLKGVSAEQLSVHLVRDGGEQHKADYIALNPQELVPTLVVD 60 M L GYWRSSAAYRVRIALNLKG+ AE SVHLV++GGEQH +Y ALNPQELVPTL+ Sbjct: 1 MKLLGYWRSSAAYRVRIALNLKGLDAELESVHLVKNGGEQHLPEYAALNPQELVPTLIEG 60 Query: 61 DEQDGDALTQSLAIIEYLDELYPKTPLLPASALERAHVRAMALTIACEIHPLNNLRVLQY 120 D + L+QSLAIIEYLDE Y +LP + RA VRAMAL+IACE+HPLNNL+VLQY Sbjct: 61 DNEF--VLSQSLAIIEYLDEQYGGAMMLPTAPKARAEVRAMALSIACEVHPLNNLKVLQY 118 Query: 121 LTQKLTVNEEAKSAWYHHWVATGFTALETQLVRHSGRYCFGDKVTIADLCLVPQVYNAQR 180 LT L ++E+AK+AWYHHW+ GF+A E QL +H+G YC+GD+VT+ADLCL+PQVYNA R Sbjct: 119 LTNTLELDEDAKNAWYHHWIHQGFSAFEKQLEKHAGSYCYGDEVTLADLCLIPQVYNANR 178 Query: 181 FNVDLTPYPNIMRVWAECNQLPAFADAAPERQADA 215 F VDL+ YPNI R+W C+QL AF AAPERQADA Sbjct: 179 FKVDLSTYPNIRRIWDNCHQLEAFVLAAPERQADA 213 Lambda K H 0.321 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 183 Number of extensions: 3 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 216 Length of database: 214 Length adjustment: 22 Effective length of query: 194 Effective length of database: 192 Effective search space: 37248 Effective search space used: 37248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate 5208938 Shew_1439 (maleylacetoacetate isomerase (RefSeq))
to HMM TIGR01262 (maiA: maleylacetoacetate isomerase (EC 5.2.1.2))
../bin/blast/fastacmd -i /tmp/list.5562.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5562.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.