Align 3-hydroxyisobutyrate dehydrogenase; HIBADH; EC 1.1.1.31 (characterized)
to candidate 5209194 Shew_1672 3-hydroxyisobutyrate dehydrogenase (RefSeq)
Query= SwissProt::P28811 (298 letters) >FitnessBrowser__PV4:5209194 Length = 299 Score = 323 bits (828), Expect = 3e-93 Identities = 174/300 (58%), Positives = 211/300 (70%), Gaps = 5/300 (1%) Query: 1 MTDIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEV 60 M +AF+GLGNMGGPMA NL+KAG+ V FDL A+ +VE+GA A SA A+V Sbjct: 1 MNTVAFIGLGNMGGPMAVNLVKAGYTVKAFDLSQTALSHVVEEGAMQAPSACAAAAAADV 60 Query: 61 VISMLPAGQHVESLYLGDD---GLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLL 117 VI+MLPAG+HV SLYLGD+ G++ VA LLIDCSTI E+AR VAE A KGL + Sbjct: 61 VITMLPAGKHVRSLYLGDEQNKGIIDVVADGTLLIDCSTIDAESARFVAEQAKTKGLEFI 120 Query: 118 DAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNML 177 DAPVSGG GA AGTL+FI GG F +A+ VL MG NIFHAG GAGQVAKICNNML Sbjct: 121 DAPVSGGTAGAAAGTLTFICGGSDTAFEQAQGVLNVMGANIFHAGGPGAGQVAKICNNML 180 Query: 178 LGILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAG 237 L +LM GT+E++ +G+ +GLDP VLSE+MK SSGGNW L+ YNP P VM P+SNGY G Sbjct: 181 LSVLMVGTSESIQMGIDHGLDPKVLSEIMKVSSGGNWTLDKYNPCPDVMENVPSSNGYQG 240 Query: 238 GFQVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSIQKLYRGK 297 GF V LM KDLGL+ A +STP+GALAR+L+ HA+ + DFSSI + + K Sbjct: 241 GFMVDLMVKDLGLSQEAALLSNSSTPMGALARSLYVNHARQG--NGKRDFSSIFEQFNKK 298 Lambda K H 0.317 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 326 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 298 Length of database: 299 Length adjustment: 27 Effective length of query: 271 Effective length of database: 272 Effective search space: 73712 Effective search space used: 73712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate 5209194 Shew_1672 (3-hydroxyisobutyrate dehydrogenase (RefSeq))
to HMM TIGR01692 (mmsB: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31))
../bin/blast/fastacmd -i /tmp/list.24645.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24645.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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