GapMind for catabolism of small carbon sources

 

Alignments for a candidate for pta in Pedobacter sp. GW460-11-11-14-LB5

Align phosphate acetyltransferase (EC 2.3.1.8) (characterized)
to candidate CA265_RS10075 CA265_RS10075 phosphate acetyltransferase

Query= metacyc::GIO2-991-MONOMER
         (792 letters)



>FitnessBrowser__Pedo557:CA265_RS10075
          Length = 695

 Score =  464 bits (1194), Expect = e-135
 Identities = 293/725 (40%), Positives = 427/725 (58%), Gaps = 53/725 (7%)

Query: 63  LFLSDISLVGQRTPLLLGFFNYFERHLPHVGFFEPIAAEALASSELRIDRHVELVYKVFN 122
           +F++       ++ +  G  N        VG+F+PI A+   + +   D HVE +   F+
Sbjct: 5   IFIASAEPYTGKSVIAFGMINMLLAKTQKVGYFKPIIAQDDPNKK---DEHVEAMLDYFS 61

Query: 123 LKGDVRAMTGVQDAEA---ARMIANGQHS-ELLDKIYSQYASYKEGQDLVLVEGPGPLMG 178
           L          +DA A     M+   + S  +++ I S+Y   ++  D  ++EG   L  
Sbjct: 62  LP------VKYEDAFAFTRQEMLHQSEDSGTIINTIISKYKKLEDNYDFTVIEGSDFLGE 115

Query: 179 GT----ELDAQIAAALNAPVLMTMTGQPNATVADYYNRAMVKRQVFLDHHVEVLGLVMNG 234
           G     E +A +A  L APVL+ ++G+ N T +  +  A+   + FL   V+VLG+V N 
Sbjct: 116 GMAFEFESNALMAKNLGAPVLIVVSGK-NKTASQLFKSAINIYRNFLLRDVQVLGVVANM 174

Query: 235 L-PRQSHAI---LSGQLRDKFAAAGLPFAGAIPTDIMLRNVRLDEVQTAMGAQRLYGDSL 290
           + P ++  I   LS QL  +   A       IPT+  L++  + E+  A+G + L+G  L
Sbjct: 175 VNPEEADRIKQALSNQLPAELLIA------VIPTETGLQSPTMKEITLALGGEVLFGSEL 228

Query: 291 LTDVEFDDVVVASQRLEELLEILAERPMGRPLVVTSADRLDIVLGLLAAQLSVSGPGVAG 350
           L D + D+ V  +  L   L  + +      L+VT  DR DI++G L A LS + P +AG
Sbjct: 229 L-DNQVDNFVTGAMMLPNFLRHIKDNL----LIVTPGDRGDIIIGALQANLSANYPKIAG 283

Query: 351 ILLTQAGSARSGRNYARDTIDRIFAGLSSSGLYKGSLLPVLVTDMPLRDAIRKLDNLDAA 410
           I+LT AGS         + I ++  GL +       ++P++       +    +  + + 
Sbjct: 284 IVLT-AGSLPD------EPIIKLIEGLQT-------IIPIIAVQKGTFETTTTIGGIHSN 329

Query: 411 ILPSSTRKISQCKRLFEQYVDANAVVARLQNMVRPNRMTPKMFMHTLKSMCNATPQHIVL 470
           I   + +KI+    LFE+YVD  A+  ++        +TP MF + L        +HIVL
Sbjct: 330 ITIENKKKIAVAIELFEKYVDIKALDDKIITFSYQG-ITPHMFQYQLVKWAKRDKKHIVL 388

Query: 471 PESEDKRVLAAAADVVQRGLAKITLLGDPTTILAEAAKLGLDL--SGCNIHNPNTSDRFD 528
           PE  D+R+L A   ++ + +  ITLLGDPT I     +LGL+L  +   IHNP  S  ++
Sbjct: 389 PEGNDERILKAVEKLITQDIVDITLLGDPTEITNTIKRLGLNLDTNTIKIHNPGQSAHYN 448

Query: 529 KYVDMLVEARKKKGMTREVAADTLHGDVNFFATMMIVAGDADGMVSGAVHTTASTVRPAL 588
            YV+ L E RK K +  E+A D +  DV++F TMM+  GDADGMVSGAVHTT  T+RPAL
Sbjct: 449 DYVNTLHELRKAKNVNLEMARDMMT-DVSYFGTMMVYKGDADGMVSGAVHTTQHTIRPAL 507

Query: 589 QVLKS-PDTPLVSSVFIMCLPDRVVVYGDCAVNVNPSAADLAQIAITSNDTAAAFGIEPR 647
           Q +K+ P   +VSS+F MCLP+RV ++GDCAVN NP+A  LA+IAI+S +++A FGIEPR
Sbjct: 508 QFVKTKPGVSVVSSIFFMCLPERVAIFGDCAVNPNPTAQQLAEIAISSAESSAKFGIEPR 567

Query: 648 VAMLSYSTLGSGSGPDVQKVSEAVAIVKQRRPDIKVEGPIQYDAAIDPKVAAVKVQGLSE 707
           +AMLSYS+  SG G DV++V EA AIVK R P++K+EGPIQYDAA+DP V   K+ G SE
Sbjct: 568 IAMLSYSSGTSGEGEDVERVREATAIVKARHPELKIEGPIQYDAAVDPLVGRQKLPG-SE 626

Query: 708 VAGKATVFIFPDLNTGNNTYKAVQQSTGAIAMGPVMQGLLRPVNDLSRGCTVPDIINTIC 767
           VAG+A+V IFPDLNTGNNTYKAVQ+ TGA+A+GP++QGL +P+NDLSRGCTV DI NT+ 
Sbjct: 627 VAGRASVLIFPDLNTGNNTYKAVQRETGALAIGPMLQGLNKPINDLSRGCTVDDIFNTVV 686

Query: 768 VTSIQ 772
           +T+IQ
Sbjct: 687 ITAIQ 691


Lambda     K      H
   0.320    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1098
Number of extensions: 55
Number of successful extensions: 9
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 695
Length adjustment: 40
Effective length of query: 752
Effective length of database: 655
Effective search space:   492560
Effective search space used:   492560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Align candidate CA265_RS10075 CA265_RS10075 (phosphate acetyltransferase)
to HMM TIGR00651 (pta: phosphate acetyltransferase (EC 2.3.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.29411.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29411.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.