Align delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; EC 1.5.1.12 (characterized)
to candidate CA265_RS16605 CA265_RS16605 1-pyrroline-5-carboxylate dehydrogenase
Query= CharProtDB::CH_122352 (572 letters) >FitnessBrowser__Pedo557:CA265_RS16605 Length = 544 Score = 524 bits (1350), Expect = e-153 Identities = 273/540 (50%), Positives = 358/540 (66%), Gaps = 7/540 (1%) Query: 30 YKVPRIDNEPNKHYAAGSPDRKALQEALARTQRNAPLSVPLVIAGKEVKSSSSLTQSNPA 89 + VP NEP YA G+ +R L+EA+A R+ L +P+ I G+EV + + P Sbjct: 6 FNVPTPVNEPINSYAPGTKERSLLKEAIADA-RSKQLDIPMFIGGQEVHTKNKKKVVAPH 64 Query: 90 SHGPV-ATYSNATAKDVQAAIESALEARKSWASTPFADRASVFLKAADLISTKYRYDVMA 148 H V AT+S V+ AI++AL A+ W + + RA++F+KAADLI+TKYRY + A Sbjct: 65 DHQHVLATFSYGDKSHVKQAIDAALAAKADWEALAWEHRAAIFMKAADLIATKYRYQINA 124 Query: 149 LTMHGQGKNAWQAEIDSAAELCDFFRFGVKYAEDLYAQQPVHHAPGVWNRVEYRPLEGFV 208 TM GQ KNA+QAEID+A EL DF RF V Y +D+Y QQP G+WNR E RPLEGF+ Sbjct: 125 ATMLGQSKNAYQAEIDAACELVDFLRFNVSYMQDIYGQQPPVSPNGMWNRTEQRPLEGFI 184 Query: 209 YAISPFNFTAIGGNLAGAPALMGNVVVWKPSPSAIASNWLVHQILLEAGLPKNVIQFVPG 268 +A++PFNFTAI GNL A+MGNVVVWKP+ + + + ++ QI EAGLP VI + Sbjct: 185 FALTPFNFTAIAGNLPACVAMMGNVVVWKPADTQVYAANVIMQIFREAGLPDGVINLIFA 244 Query: 269 EAEEVTKTVLDHPDFAALHFTGSTNVFRNLYGQISTRVAAGKYRSYPRIVGETGGKNFHL 328 + EV V +H DFA +HFTGST VF+ ++ I T + KY+SYPRIVGETGGK+F L Sbjct: 245 DGPEVGDVVFNHADFAGIHFTGSTKVFQEIWKTIGTNI--HKYKSYPRIVGETGGKDFIL 302 Query: 329 IHKSADIRNAAVQTVRGAFEYQGQKCSATSRVYVASSIADSFLEQVASEAKSLKVGPPSD 388 +H SAD+ +A VRGAFEYQGQKCSA SR Y+ S+ + + + S K+G D Sbjct: 303 VHPSADVAASATAIVRGAFEYQGQKCSAASRTYIPKSLWPEIKKLMIRDLASFKMGGTED 362 Query: 389 FTNFCGPVIHEASFTKLAKVIDEAKNDPELELLAGGSYDSSKGWYIQPTVYRTTNPDHPL 448 F+NF VI E SF KLAK ID+AK D +E++AGG+YD SKG++I+PT+ +P + Sbjct: 363 FSNFINAVIDERSFDKLAKYIDQAKKDKGVEVIAGGNYDKSKGYFIEPTILVVDDPKYTT 422 Query: 449 LTRELFGPILVVYAYPDATEADFARIAQKIDATGEYGLTGSVFAQDREALAVANDVLRNA 508 + ELFGP+L VY Y D +F ++ + ID T Y LTG++ +QDR A+ A+ LRN+ Sbjct: 423 MCEELFGPVLSVYVYED---QEFDQVLEIIDTTSPYALTGAILSQDRYAIEKASYALRNS 479 Query: 509 AGNFYINCKSTGAVVGQQPFGGARASGTNDKAGSGNLLSRFVSLRSIKEEFVPTYKVAYP 568 AGNFYIN K TGAVVGQQPFGGAR SGTNDKAG+ L R+VS R+IKE F P YP Sbjct: 480 AGNFYINDKCTGAVVGQQPFGGARGSGTNDKAGAMINLLRWVSPRTIKETFNPPTDYRYP 539 Lambda K H 0.316 0.130 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 876 Number of extensions: 30 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 572 Length of database: 544 Length adjustment: 36 Effective length of query: 536 Effective length of database: 508 Effective search space: 272288 Effective search space used: 272288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate CA265_RS16605 CA265_RS16605 (1-pyrroline-5-carboxylate dehydrogenase)
to HMM TIGR01236 (pruA: 1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88))
../bin/blast/fastacmd -i /tmp/list.16438.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16438.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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