Align UDP-glucose 4-epimerase; EC 5.1.3.2 (characterized, see rationale)
to candidate CA265_RS25430 CA265_RS25430 UDP-glucose 4-epimerase GalE
Query= uniprot:L0FXG3 (337 letters) >FitnessBrowser__Pedo557:CA265_RS25430 Length = 340 Score = 364 bits (935), Expect = e-105 Identities = 183/338 (54%), Positives = 238/338 (70%), Gaps = 4/338 (1%) Query: 1 MQQILITGGAGYIGSHTAVALVNAGYEPIIVDNFSNSNKEVLNGLEKILGAPVKYHEGDC 60 M +IL+TGG GYIGSHTAV L NAGYE +IVDN SNSN ++L L I G +HE D Sbjct: 1 MAKILVTGGTGYIGSHTAVELHNAGYEVVIVDNLSNSNIKILTQLHAITGKWFDFHEIDL 60 Query: 61 NDRKFMQAVFEEN-DLQGVIHFAASKAVGESTKIPLTYYSNNINSLIILLETMKQFGVKD 119 D + +Q E + D+ G+IHFAASKAVGES + PL YY NN LI LL + + + Sbjct: 61 QDDRAVQEFAENHTDIDGIIHFAASKAVGESVEQPLKYYKNNFYGLINLLTSFNR--KIN 118 Query: 120 IVFSSSCTVYGQPDKLPVKETTPRKDAESPYGNTKKICEDILTDHVKSGAPARVVALRYF 179 VFSSSCTVYGQP+ LPV E P + AESPYGNTK+I E+IL + ++ALRYF Sbjct: 119 FVFSSSCTVYGQPETLPVTEAAPVQKAESPYGNTKQIAEEILAETAAVTPALNIIALRYF 178 Query: 180 NPIGAHPSSLIGELPLGVPANLIPFVTQTGAGIREKITVFGDDYNTPDGTCIRDYIHVMD 239 NP+GAH ++LIGELP GVPANL+PF+TQ+ G R ITV+GDDY+TPDG+ IRDYIHV+D Sbjct: 179 NPVGAHETALIGELPNGVPANLVPFITQSAIGKRGPITVYGDDYDTPDGSAIRDYIHVVD 238 Query: 240 LADAHVKSIQYLAD-QPENFIDLFNVGTGNGNTVMEVIKAFEKVSEKPLNYEIGPRRSGD 298 LA AHV +I+ L + P D+FN+GTG G++V+E+I AFEKV+ + L+Y+IGPRR+GD Sbjct: 239 LAKAHVAAIKKLEEGNPNGNYDVFNIGTGKGSSVLEIIAAFEKVNGEKLDYKIGPRRAGD 298 Query: 299 IEKVWANTDKVSKVLGWTPQFGLEEALRDAWNWQLSLK 336 I +++ + K + LGW + E +R AW W+ +K Sbjct: 299 IVQIYGDVQKSNNELGWKANLDINEMMRSAWEWEKYIK 336 Lambda K H 0.316 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 398 Number of extensions: 18 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 340 Length adjustment: 28 Effective length of query: 309 Effective length of database: 312 Effective search space: 96408 Effective search space used: 96408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate CA265_RS25430 CA265_RS25430 (UDP-glucose 4-epimerase GalE)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.29872.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29872.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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