Align Histidine ammonia-lyase (EC 4.3.1.3) (characterized)
to candidate CA265_RS22270 CA265_RS22270 histidine ammonia-lyase
Query= reanno::Pedo557:CA265_RS22270 (511 letters) >FitnessBrowser__Pedo557:CA265_RS22270 Length = 511 Score = 997 bits (2577), Expect = 0.0 Identities = 511/511 (100%), Positives = 511/511 (100%) Query: 1 MSEQQIFNYGTDHLTAKLALAISNGQIKGVLSQSTRDKVLESSQVVERIAVSGKAVYGIN 60 MSEQQIFNYGTDHLTAKLALAISNGQIKGVLSQSTRDKVLESSQVVERIAVSGKAVYGIN Sbjct: 1 MSEQQIFNYGTDHLTAKLALAISNGQIKGVLSQSTRDKVLESSQVVERIAVSGKAVYGIN 60 Query: 61 TGFGPLCTSMISAIDTRKLQENILKSHAVGVGEPIDSEISKLMLVLKLQALAQGYSGIKI 120 TGFGPLCTSMISAIDTRKLQENILKSHAVGVGEPIDSEISKLMLVLKLQALAQGYSGIKI Sbjct: 61 TGFGPLCTSMISAIDTRKLQENILKSHAVGVGEPIDSEISKLMLVLKLQALAQGYSGIKI 120 Query: 121 ETLDRMIWFLEIGATPVVPKQGSVGASGDLAPLSHLFLPLIGLGKLHYKGEIIATAQLLQ 180 ETLDRMIWFLEIGATPVVPKQGSVGASGDLAPLSHLFLPLIGLGKLHYKGEIIATAQLLQ Sbjct: 121 ETLDRMIWFLEIGATPVVPKQGSVGASGDLAPLSHLFLPLIGLGKLHYKGEIIATAQLLQ 180 Query: 181 EYQMSPLQLGPKEGLALINGTQFIAAHAVKVVQRLENVLDSADIIAAMMIEGLQGSEKPF 240 EYQMSPLQLGPKEGLALINGTQFIAAHAVKVVQRLENVLDSADIIAAMMIEGLQGSEKPF Sbjct: 181 EYQMSPLQLGPKEGLALINGTQFIAAHAVKVVQRLENVLDSADIIAAMMIEGLQGSEKPF 240 Query: 241 HAQLHQLRPYPANIAVAEQVRKLLQGSEIMKSHADCAKVQDPYSLRCIPQVHGASRTAWL 300 HAQLHQLRPYPANIAVAEQVRKLLQGSEIMKSHADCAKVQDPYSLRCIPQVHGASRTAWL Sbjct: 241 HAQLHQLRPYPANIAVAEQVRKLLQGSEIMKSHADCAKVQDPYSLRCIPQVHGASRTAWL 300 Query: 301 HLKEALEIELNSVTDNPVIFNDDLTISGGNFHGQPLALPLDYACLAASEIGNISDRRIYL 360 HLKEALEIELNSVTDNPVIFNDDLTISGGNFHGQPLALPLDYACLAASEIGNISDRRIYL Sbjct: 301 HLKEALEIELNSVTDNPVIFNDDLTISGGNFHGQPLALPLDYACLAASEIGNISDRRIYL 360 Query: 361 SLEGNTPGVPKLLMKETGLNSGFMIVQYTSAALASENKGLCFPASADSIPTSLGQEDHVS 420 SLEGNTPGVPKLLMKETGLNSGFMIVQYTSAALASENKGLCFPASADSIPTSLGQEDHVS Sbjct: 361 SLEGNTPGVPKLLMKETGLNSGFMIVQYTSAALASENKGLCFPASADSIPTSLGQEDHVS 420 Query: 421 MGSISGRKALQVIENVEKILGIELFCAAQAVDYHHPLKPGKILAAVHDFVRTEIDHFEED 480 MGSISGRKALQVIENVEKILGIELFCAAQAVDYHHPLKPGKILAAVHDFVRTEIDHFEED Sbjct: 421 MGSISGRKALQVIENVEKILGIELFCAAQAVDYHHPLKPGKILAAVHDFVRTEIDHFEED 480 Query: 481 QIMYDRMENAIQMVQQGKIVAVAAEAESTLT 511 QIMYDRMENAIQMVQQGKIVAVAAEAESTLT Sbjct: 481 QIMYDRMENAIQMVQQGKIVAVAAEAESTLT 511 Lambda K H 0.318 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 979 Number of extensions: 19 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 511 Length of database: 511 Length adjustment: 35 Effective length of query: 476 Effective length of database: 476 Effective search space: 226576 Effective search space used: 226576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)
Align candidate CA265_RS22270 CA265_RS22270 (histidine ammonia-lyase)
to HMM TIGR01225 (hutH: histidine ammonia-lyase (EC 4.3.1.3))
../bin/blast/fastacmd -i /tmp/list.4493.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4493.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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