Align Methylmalonyl-CoA epimerase; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 (characterized)
to candidate CA265_RS10815 CA265_RS10815 methylmalonyl-CoA epimerase
Query= SwissProt::O58010 (136 letters) >FitnessBrowser__Pedo557:CA265_RS10815 Length = 135 Score = 126 bits (317), Expect = 1e-34 Identities = 60/128 (46%), Positives = 89/128 (69%), Gaps = 1/128 (0%) Query: 7 RIDHVGIAVKNLEEAIKIWEGL-GFKVEEIEEVPDQKVKVAVIKVGENRIELLEATTEDS 65 +I+H+GIAVK+L +I I++ L + E+V + V A K GEN++ELL+AT DS Sbjct: 3 KIEHIGIAVKDLNSSIAIYQKLLNTDCYKTEQVASEFVNTAFFKTGENKVELLQATAPDS 62 Query: 66 PIAKFIEKRGEGIHHLAIRVENIESKLEELKQKGYKLIDEKPRVGAGGAKIAFIHPKSVT 125 IAKFIEK+GEGIHH+A V++I +++E L Q+G+ L+ E P+ GA + F+HPK Sbjct: 63 AIAKFIEKKGEGIHHIAFLVDDILAEMERLHQEGFVLLSESPKKGADDKMVCFVHPKDTN 122 Query: 126 GVLLELCE 133 GVL+E+C+ Sbjct: 123 GVLIEICQ 130 Lambda K H 0.317 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 87 Number of extensions: 6 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 136 Length of database: 135 Length adjustment: 15 Effective length of query: 121 Effective length of database: 120 Effective search space: 14520 Effective search space used: 14520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 42 (20.8 bits)
Align candidate CA265_RS10815 CA265_RS10815 (methylmalonyl-CoA epimerase)
to HMM TIGR03081 (mce: methylmalonyl-CoA epimerase (EC 5.1.99.1))
../bin/blast/fastacmd -i /tmp/list.14554.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14554.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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