Align purine-nucleoside phosphorylase (EC 2.4.2.1) (characterized)
to candidate GFF371 PGA1_c03820 purine nucleoside phosphorylase deoD-type
Query= BRENDA::O34925 (233 letters) >FitnessBrowser__Phaeo:GFF371 Length = 234 Score = 260 bits (664), Expect = 2e-74 Identities = 124/231 (53%), Positives = 179/231 (77%), Gaps = 1/231 (0%) Query: 1 MSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQ 60 M+VHIGA KG+IA+TVLLPGDP RAK+ AET+L++V NEVRGM GFTGT+ G +++Q Sbjct: 1 MTVHIGAAKGEIAETVLLPGDPYRAKWAAETFLKDVRLVNEVRGMLGFTGTWNGHPVTIQ 60 Query: 61 GTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAF 120 G+GMG+PS+SIYVNELI+ YD + LIR+GSCG ++ VK+RDVILAMT++T +R F Sbjct: 61 GSGMGMPSLSIYVNELIRDYDAKTLIRIGSCGGMQDKVKIRDVILAMTATTTGSPSRGIF 120 Query: 121 GSVDFAPCADFELLKNAYDAAKDKGVPVTVGSVFTADQFYNDDSQI-EKLAKYGVLGVEM 179 V+FAPCAD+ LL+ A AA+ + +G ++++D FY++ + E++ ++G+LGVEM Sbjct: 121 KEVNFAPCADWSLLQAAVKAAETHELTPHIGGIYSSDVFYDERPDLNEQMVRHGILGVEM 180 Query: 180 ETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTFHDMIEVALHS 230 E LYTLAA++G +AL++LTVSDH+ TGE +++R+ +F DM+E+AL + Sbjct: 181 EAAELYTLAARYGCRALAVLTVSDHLGTGEALPSDQRERSFGDMVEIALEA 231 Lambda K H 0.317 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 189 Number of extensions: 7 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 233 Length of database: 234 Length adjustment: 23 Effective length of query: 210 Effective length of database: 211 Effective search space: 44310 Effective search space used: 44310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 46 (22.3 bits)
Align candidate GFF371 PGA1_c03820 (purine nucleoside phosphorylase deoD-type)
to HMM TIGR00107 (deoD: purine nucleoside phosphorylase (EC 2.4.2.1))
../bin/blast/fastacmd -i /tmp/list.18249.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18249.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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