Align phosphogluconate dehydratase (EC 4.2.1.12) (characterized)
to candidate GFF2757 PGA1_c28000 phosphogluconate dehydratase Edd
Query= BRENDA::Q1PAG1 (608 letters) >FitnessBrowser__Phaeo:GFF2757 Length = 607 Score = 699 bits (1805), Expect = 0.0 Identities = 349/606 (57%), Positives = 453/606 (74%), Gaps = 5/606 (0%) Query: 1 MHPRVLEVTERLVARSRATREAYLALIRGAASDGPQRGKLQCANFAHGVAGCGSEDKHSL 60 ++ V +VT+R++ARS R AYL +R A GP R L C+ AH A G ED+ L Sbjct: 3 LNQTVRDVTDRIIARSAKPRAAYLDRMRAAKGKGPARAHLSCSGQAHAYAATG-EDQMPL 61 Query: 61 RMMNAANVAIVSSYNDMLSAHQPYEHFPEQIKKALREMGSVGQFAGGTPAMCDGVTQGEA 120 A ++ IV++YNDMLSAHQP+E +P++I+ A+R +G Q AGG PAMCDGVTQGEA Sbjct: 62 AEGTAGHLGIVTAYNDMLSAHQPFETYPQRIRDAVRRVGGTAQVAGGVPAMCDGVTQGEA 121 Query: 121 GMELSLPSREVIALSTAVALSHNMFDAALMLGICDKIVPGLMMGALRFGHLPTIFVPGGP 180 GMELSL SR+ IA++T +ALSHN+FDA + LG+CDKIVPGL++GA FGHLP +F+P GP Sbjct: 122 GMELSLFSRDTIAMATGIALSHNVFDATVYLGVCDKIVPGLVIGAQVFGHLPAVFLPAGP 181 Query: 181 MPSGISNKEKADVRQRYAEGKATREELLESEMKSYHSPGTCTFYGTANTNQLLMEVMGLH 240 M SGISN +KA VRQ++A G+ R+ELL+SEM +YH PGTCTFYGTANTNQ+LME MGLH Sbjct: 182 MTSGISNDDKAKVRQKFAAGEIGRDELLKSEMAAYHGPGTCTFYGTANTNQMLMEFMGLH 241 Query: 241 LPGASFVNPYTPLRDALTHEAAQQVTRLTKQSGNFTPIGEIVDERSLVNSIVALHATGGS 300 LPG+SFVNP T +R ALT E A++ L+ ++TP+ +I+DER+ VN IV L TGGS Sbjct: 242 LPGSSFVNPGTDMRAALTEEGARRALALSALGNDYTPVCDILDERAYVNGIVGLMTTGGS 301 Query: 301 TNHTLHMPAIAQAAGIQLTWQDMADLSEVVPTLSHVYPNGKADINHFQAAGGMAFLIREL 360 TN +H+ A+A+A GI L WQD ++LS+VVP L+ VYPNG AD+NHF AAGG+ ++I +L Sbjct: 302 TNLLIHLIAMARAGGIILDWQDFSELSDVVPLLARVYPNGLADVNHFHAAGGLGYVIGQL 361 Query: 361 LEAGLLHEDVNTVAGRGLSRYTQEPFLDNGKLVWRDGPIESLDENILRPVARAFSPEGGL 420 L +G LH D TVAG GL YT EPFL + LVW+ G ESL++ I+RP + F P GGL Sbjct: 362 LNSGHLHSDTRTVAGSGLESYTAEPFLSDDGLVWKPGAAESLNDKIIRPASAPFQPTGGL 421 Query: 421 RVMEGNLGRGVMKVSAVALQHQIVEAPAVVFQDQQDLADAFKAGELEK-DFVAVMRFQGP 479 + GNLG GVMK+SAVA +H++VEAPA VF DQ+++ AFKAGEL+K D + V+RFQGP Sbjct: 422 ARLSGNLGTGVMKISAVAPEHRMVEAPARVFHDQEEVKAAFKAGELDKGDMIIVVRFQGP 481 Query: 480 RSNGMPELHKMTPFLGVLQDRGFKVALVTDGRMSGASGKIPAAIHVSPEAQVGGALARVR 539 ++NGMPELH MTPFLG++Q RG KVALVTDGRMSGASGKIP+AIHV PEA GG ++++R Sbjct: 482 KANGMPELHSMTPFLGIMQGRGQKVALVTDGRMSGASGKIPSAIHVVPEALDGGPISKLR 541 Query: 540 DGDIIRVDGVKGTLELKVDADEFAAREP-AKGLLGNNVGSGRELFGFMRMAFSSAEQGAS 598 DGD++RVD + GTLE+K A+ F R+P L G+GRE+F R A +SA+ GA+ Sbjct: 542 DGDMVRVDALTGTLEVK--AEGFDDRDPVVADLSAYQHGTGREMFALFRNAVTSADTGAT 599 Query: 599 AFTSAL 604 F++ + Sbjct: 600 VFSTLI 605 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1079 Number of extensions: 43 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 608 Length of database: 607 Length adjustment: 37 Effective length of query: 571 Effective length of database: 570 Effective search space: 325470 Effective search space used: 325470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate GFF2757 PGA1_c28000 (phosphogluconate dehydratase Edd)
to HMM TIGR01196 (edd: phosphogluconate dehydratase (EC 4.2.1.12))
../bin/blast/fastacmd -i /tmp/list.9335.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9335.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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