Align UDP-glucose 4-epimerase; EC 5.1.3.2; Galactowaldenase; UDP-galactose 4-epimerase (uncharacterized)
to candidate GFF3394 PGA1_c34470 UDP-glucose 4-epimerase ExoB
Query= curated2:Q59745 (327 letters) >FitnessBrowser__Phaeo:GFF3394 Length = 327 Score = 330 bits (847), Expect = 2e-95 Identities = 163/317 (51%), Positives = 215/317 (67%), Gaps = 1/317 (0%) Query: 6 VLVVGGAGYIGSHTCLDLANKGYRPVVFDNFSNGHREFVRWGPAEEGDIRDRARLDEVLA 65 +LV GGAGYIGSH C L G+ PV +DN G ++ V++GP E+GD+ DRARLDEV A Sbjct: 4 ILVTGGAGYIGSHACKALRAAGFTPVTYDNLVTGWQDAVKFGPFEKGDLSDRARLDEVFA 63 Query: 66 KHKPAAILHFAALIEVGESVKDPVSFYENNVIGTLTLLSAAQAAGINAFVFSSTCATYGL 125 K++PAA++HFAAL +VGE++ +P ++ NNV G+LTL+ AA AA FVFSSTCATYG Sbjct: 64 KYQPAAVMHFAALSQVGEAMSEPGRYWANNVGGSLTLIEAAVAADCLDFVFSSTCATYGE 123 Query: 126 PQSVPLDETHRQVPINPYGRTKYIVEQALADYDQYGSLRSVVLRYFNAAGADFEGRIGEW 185 +V LDE+ QVP+N YG +K VE L D+ LRSV+ RYFN AGAD E +GE+ Sbjct: 124 HDNVVLDESTPQVPLNAYGASKRAVEDILRDFGASHGLRSVIFRYFNVAGADPEAEVGEF 183 Query: 186 HQPETHAIPLAIDAALGRRQGFKVFGSDYETRDGTCVRDYIHVLDLADAHVRAVEYLLKG 245 H+PETH +PL +DA G+R +FG+DY+T DGTCVRDY+HV DL DAHV +++L G Sbjct: 184 HRPETHLVPLVLDAIDGKRDALTIFGTDYDTPDGTCVRDYVHVCDLVDAHVLGLKWLKDG 243 Query: 246 GDSVALNLGTGTGTTVKELLGAIEEVSNRPFPVEYIGRREGDSHTLVANNDKARDVLGWV 305 S NLGTGTG +V+E++ E + + P RR GD LV+ + +A +LGW Sbjct: 244 KGSQVFNLGTGTGFSVREVMDKAEATTGKSVPHSIGPRRAGDCTKLVSGSVRAATLLGWE 303 Query: 306 P-QYDLSEIIRSAWDWH 321 P + DL +I AW WH Sbjct: 304 PTRSDLETMIADAWGWH 320 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 383 Number of extensions: 13 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 327 Length of database: 327 Length adjustment: 28 Effective length of query: 299 Effective length of database: 299 Effective search space: 89401 Effective search space used: 89401 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate GFF3394 PGA1_c34470 (UDP-glucose 4-epimerase ExoB)
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.17355.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17355.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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