Align branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.42) (characterized)
to candidate GFF3358 PGA1_c34110 branched-chain-amino-acid aminotransferase IlvE
Query= metacyc::MONOMER-11914 (306 letters) >FitnessBrowser__Phaeo:GFF3358 Length = 288 Score = 228 bits (580), Expect = 2e-64 Identities = 117/265 (44%), Positives = 167/265 (63%), Gaps = 7/265 (2%) Query: 4 EASGKIWLNGEMVEWEEATVHVLSHVVHYGSSVFEGIRCYRNSKGSAIFRLREHVKRLFD 63 + G IW++GEMV W +A VH+LSH +HY SSVFEG R Y IF+ REH +RL Sbjct: 6 DRDGLIWMDGEMVNWRDAKVHILSHAMHYASSVFEGERAYNGK----IFKSREHSERLIA 61 Query: 64 SAKIYRMDIPYTQEQICDAIVETVRENGLEECYIRPVVFRGYGE-MGVHPVNCPVDVAVA 122 SA+ M +PYT +QI A ET++ +GL++ Y+R VV+RG GE MGV PV +A+A Sbjct: 62 SAEALDMPMPYTVDQIEAAKEETLKASGLQDAYVRAVVWRGSGEDMGVASAKNPVRMAIA 121 Query: 123 AWEWGAYLGAEALEVGVDAGVSTWRRMAPNTMPNMAKAGGNYLNSQLAKMEAVRHGYDEA 182 W WGAY G ++ G ++ W+R +P T+P AKA G Y+ ++K +A G +A Sbjct: 122 VWGWGAYYGDAKMQ-GAKLDIAEWKRPSPETIPVHAKAAGLYMICTISKHKAEAKGCSDA 180 Query: 183 IMLDYHGYISEGSGENIFLVSEGEIYTPPVSSSLLRGITRDSVIKIARTEGVTVHEEPIT 242 + +DY GY++E +G NIF V +GE++TP L GITR +VI + + G+TVHE I Sbjct: 181 LFMDYRGYVAEATGANIFFVKDGEVHTPK-PDCFLNGITRQTVIGMLKDRGITVHERHIM 239 Query: 243 REMLYIADEAFFTGTAAEITPIRSV 267 E L ++ + TGTAAE+TP+ + Sbjct: 240 PEELDGFEQCWLTGTAAEVTPVGQI 264 Lambda K H 0.320 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 306 Number of extensions: 18 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 306 Length of database: 288 Length adjustment: 26 Effective length of query: 280 Effective length of database: 262 Effective search space: 73360 Effective search space used: 73360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate GFF3358 PGA1_c34110 (branched-chain-amino-acid aminotransferase IlvE)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.23570.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23570.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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