Align dihydrolipoyl dehydrogenase (EC 1.8.1.4) (characterized)
to candidate GFF2287 PGA1_c23190 dihydrolipoyl dehydrogenase LpdA
Query= BRENDA::P0A9P0 (474 letters) >FitnessBrowser__Phaeo:GFF2287 Length = 459 Score = 464 bits (1194), Expect = e-135 Identities = 238/459 (51%), Positives = 314/459 (68%), Gaps = 8/459 (1%) Query: 9 VVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKA 68 ++VLGAGP GY+ AFR ADLG +IV+ TLGGVCLNVGCIPSKALLH A++I E + Sbjct: 8 LIVLGAGPGGYACAFRAADLGRSVIIVDPRATLGGVCLNVGCIPSKALLHAAEMIRETRH 67 Query: 69 LAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVE 128 GI+ G D++K+R K+ ++ QLT GL G+AK RKV+ + G +FT +LE++ Sbjct: 68 GGGWGILTGNVSVDLNKLRAKKDSIVEQLTTGLVGLAKRRKVQTIRGSAQFTSDKSLEID 127 Query: 129 GENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGL 188 GE+ FD A+IA GS P++LP P ED RIWDSTDALEL+E+P+RL ++GGGIIGL Sbjct: 128 GESW----TFDQAVIAVGSAPVRLPGWP-EDDRIWDSTDALELREIPKRLSIVGGGIIGL 182 Query: 189 EMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDG 247 EM TVY ALGS++ V+E DQ+ P AD D V + + ++ + TKVT V+A + Sbjct: 183 EMATVYAALGSKVTVIEFMDQIAPGADADAVTILRAALETEDVTIHTGTKVTEVKASKTA 242 Query: 248 IYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPH 307 + +T EG + DA + A+GR NG +D AGVE DDRG I VD RTNV Sbjct: 243 LTLTCEGGFEGTI--KADAAIQAVGRRSNGSLVDPAAAGVEADDRGIIPVDASCRTNVAT 300 Query: 308 IFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEA 367 +FAIGD+ G PMLAH+ H+GHVAAEV +G D +IPS+AYT PE+AW GLT+ +A Sbjct: 301 VFAIGDVTGNPMLAHRATHQGHVAAEVASGHATALDTDLIPSVAYTAPELAWAGLTQAKA 360 Query: 368 KEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGL 427 E+GI + A FPWAASGR ++S +G+TKL++ +SHR++G IVG N GELL E L Sbjct: 361 TERGIPHRVANFPWAASGRNLSSGGGEGLTKLVYCPDSHRLLGATIVGRNAGELLAECVL 420 Query: 428 AIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDL 466 A+EMG ED++L +HAHPTL E+VG AAE G++TDL Sbjct: 421 AMEMGATLEDMSLAVHAHPTLSETVGFAAERALGTLTDL 459 Lambda K H 0.317 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 562 Number of extensions: 18 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 474 Length of database: 459 Length adjustment: 33 Effective length of query: 441 Effective length of database: 426 Effective search space: 187866 Effective search space used: 187866 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate GFF2287 PGA1_c23190 (dihydrolipoyl dehydrogenase LpdA)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.12356.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12356.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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