Align 3-oxoadipyl-CoA thiolase; EC 2.3.1.174 (characterized, see rationale)
to candidate GFF398 PGA1_c04090 beta-ketoadipyl-CoA thiolase PaaJ
Query= uniprot:D8ITH5 (401 letters) >FitnessBrowser__Phaeo:GFF398 Length = 400 Score = 560 bits (1442), Expect = e-164 Identities = 278/400 (69%), Positives = 321/400 (80%) Query: 1 MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 M+A ICDA RTP GRYGGAL +R DDLAA PI +L RNP VDWS ++D++ G ANQAG Sbjct: 1 MDAFICDATRTPIGRYGGALSQLRTDDLAALPIAALAARNPDVDWSSLDDVILGDANQAG 60 Query: 61 EDNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 E NRNVARMA LLAGLP VPG+T+NRLC S +DAVGMA+R IK+G+ + IAGGVESM+ Sbjct: 61 ESNRNVARMAALLAGLPTTVPGTTINRLCASGMDAVGMASRGIKAGDYDMAIAGGVESMS 120 Query: 121 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ 180 RAPFVM KA SAF R+ A++DTTIGWRFVN M YG DSMP+TA+NVA D+ I+R DQ Sbjct: 121 RAPFVMPKATSAFTRANAVYDTTIGWRFVNKKMHEMYGTDSMPQTADNVAEDYGISREDQ 180 Query: 181 DAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGV 240 DAFA RSQ RWAAA AG F EI P+TIPQ+KGD LVV TDEHPRP T+ LA LKGV Sbjct: 181 DAFAARSQARWAAAHEAGIFNDEITPVTIPQRKGDDLVVDTDEHPRPGTSAEKLAGLKGV 240 Query: 241 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP 300 PD +VTAGNASGVNDGA A+L+A+ AA LKP AR++GM AGV PRIMG GP P Sbjct: 241 NGPDKSVTAGNASGVNDGAAAILMANEAAAAKNGLKPMARIVGMTAAGVEPRIMGIGPVP 300 Query: 301 AVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGA 360 A RKVLA+ GLT+ QMDVIELNEAFA+QGLA +R+LG+ DDA HVNPNGGAIA+GHPLG Sbjct: 301 ATRKVLARTGLTIDQMDVIELNEAFASQGLATLRELGVADDAPHVNPNGGAIALGHPLGM 360 Query: 361 SGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERV 400 SGARLV TA QL+R+GGRYALCTMC+GVGQG AL++ERV Sbjct: 361 SGARLVLTAAYQLQRTGGRYALCTMCVGVGQGTALILERV 400 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 553 Number of extensions: 16 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 400 Length adjustment: 31 Effective length of query: 370 Effective length of database: 369 Effective search space: 136530 Effective search space used: 136530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate GFF398 PGA1_c04090 (beta-ketoadipyl-CoA thiolase PaaJ)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.7709.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7709.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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