Align Acetyl-coenzyme A synthetase (EC 6.2.1.1) (characterized)
to candidate GFF1279 PGA1_c12950 acetyl-coenzyme A synthetase Acs
Query= reanno::pseudo3_N2E3:AO353_03060 (651 letters) >FitnessBrowser__Phaeo:GFF1279 Length = 695 Score = 833 bits (2153), Expect = 0.0 Identities = 411/644 (63%), Positives = 477/644 (74%), Gaps = 5/644 (0%) Query: 2 SAASLYPVRPEVAANTLTDEATYKAMYQQSVVNPDGFWREQAKRLDWIKPFTTVKQTSFD 61 S + Y E A + A Y MY S+ +P+GFWR+QA+R+DWIKPFT VK F Sbjct: 47 SDSKAYAPSEETVARAHVNAAQYDEMYAASMQDPEGFWRQQAERIDWIKPFTQVKDVDFT 106 Query: 62 DHHVDIKWFADGTLNVSYNCLDRHLAERGDQIAIIWEGDDPAES-RNITYRELHEQVCKF 120 +V I W+ADGTLNV+ NC+DRHL RGDQ AIIWE D P E+ ++I+Y++LH +VC+ Sbjct: 107 LGNVSINWYADGTLNVAANCIDRHLDTRGDQTAIIWEPDSPDEAAQHISYKQLHTRVCRM 166 Query: 121 ANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAIHSVVFGGFSPEALAGRIIDCKS 180 AN L V +GD V IY+PMIPEA AMLAC RIGAIHS+VF GFSP+ALA R+ C + Sbjct: 167 ANVLETMGVRKGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARVNGCDA 226 Query: 181 KVVITADEGLRAGKKISLKANVDDALTNPETSSIQKVIVCKRTGGNIKWNQHRDIWYEDL 240 KV+ITADE R G+K LK+N D AL + T K +V KRTGG W RD Y ++ Sbjct: 227 KVLITADEAPRGGRKTPLKSNADAALLH--TKDTVKCLVVKRTGGQTTWIDGRDYDYNEM 284 Query: 241 MKVAGTVCAPKEMGAEEALFILYTSGSTGKPKGVQHTTGGYLLYAALTHERVFDYRPGEI 300 A P EM AE+ LFILYTSGSTG+PKGV HTTGGYL YAA+THE FDY G+I Sbjct: 285 ALEADDYSKPAEMNAEDPLFILYTSGSTGQPKGVVHTTGGYLTYAAMTHEITFDYHDGDI 344 Query: 301 YWCTADVGWVTGHTYIVYGPLANGATTLLFEGVPNYPDITRVAKIIDKHKVNILYTAPTA 360 YWCTADVGWVTGH+YIVYGPLANGATTL+FEGVP YPD +R ++ DKHKV YTAPTA Sbjct: 345 YWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDASRFWQVCDKHKVTQFYTAPTA 404 Query: 361 IRAMMAQGTAAVEGADGSSLRLLGSVGEPINPEAWEWYYKNVGQSRCPIVDTWWQTETGA 420 +RA+M QG VE D SSLR LG+VGEPINPEAW WY VG+ +CPIVDTWWQTETG Sbjct: 405 LRALMGQGNEWVEKCDLSSLRTLGTVGEPINPEAWNWYNDIVGKGKCPIVDTWWQTETGG 464 Query: 421 TLMSPLPGAHGLKPGSAARPFFGVVPALVD-NLGNIIEG-VAEGNLVILDSWPGQARTLY 478 LM+PLPGAH KPG+A +PFFGV P ++D G I G EG L I DSWPGQ RT++ Sbjct: 465 HLMTPLPGAHATKPGAAMKPFFGVAPVVLDPQSGEEITGNGVEGVLCIKDSWPGQMRTVW 524 Query: 479 GDHDRFVDTYFKTFRGMYFTGDGARRDADGYWWITGRVDDVLNVSGHRMGTAEIESAMVA 538 GDH+RF TYF ++G YFTGDG RRD DG +WITGRVDDV+NVSGHRMGTAE+ESA+VA Sbjct: 525 GDHERFEKTYFSDYKGYYFTGDGCRRDEDGDYWITGRVDDVINVSGHRMGTAEVESALVA 584 Query: 539 HPKVAEAAVVGVPHDIKGQGIYVYVTLNGGEEPSEALRLELKNWVRKEIGPIASPDVIQW 598 H VAEAAVVG PH+IKGQGIY YVTL EPS+ L EL+ WVR EIGPIASPDVIQW Sbjct: 585 HAAVAEAAVVGYPHEIKGQGIYCYVTLMNDREPSDELVKELRTWVRTEIGPIASPDVIQW 644 Query: 599 APGLPKTRSGKIMRRILRKIATGEYDGLGDISTLADPGVVQHLI 642 APGLPKTRSGKIMRRILRKIA ++ LGD STLADP VV LI Sbjct: 645 APGLPKTRSGKIMRRILRKIAENDFGSLGDTSTLADPSVVDDLI 688 Lambda K H 0.319 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1580 Number of extensions: 86 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 651 Length of database: 695 Length adjustment: 39 Effective length of query: 612 Effective length of database: 656 Effective search space: 401472 Effective search space used: 401472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate GFF1279 PGA1_c12950 (acetyl-coenzyme A synthetase Acs)
to HMM TIGR02188 (acs: acetate--CoA ligase (EC 6.2.1.1))
../bin/blast/fastacmd -i /tmp/list.22475.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22475.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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