Align Ethylmalonyl-CoA/methylmalonyl-CoA epimerase; EC 5.1.99.-; EC 5.1.99.1 (characterized)
to candidate GFF2418 PGA1_c24490 methylmalonyl-CoA epimerase
Query= SwissProt::Q3IZP4 (134 letters) >FitnessBrowser__Phaeo:GFF2418 Length = 134 Score = 258 bits (658), Expect = 3e-74 Identities = 124/134 (92%), Positives = 130/134 (97%) Query: 1 MIGRLNHVAIAVPDLEAAAAQYRNTLGAEVGAPQDEPDHGVTVIFITLPNTKIELLHPLG 60 MIGRLNHVAIAVPDL+AA+AQYRNTLGA+VGAPQDEPDHGVTV+FI LPNTKIELL+PLG Sbjct: 1 MIGRLNHVAIAVPDLDAASAQYRNTLGAKVGAPQDEPDHGVTVVFIELPNTKIELLYPLG 60 Query: 61 EGSPIAGFLEKNPAGGIHHICYEVEDILAARDRLKEAGARVLGSGEPKIGAHGKPVLFLH 120 E SPIAGFLEKNPAGGIHHICYEV+DILAARDRLK GARVLGSGEPKIGAHGKPVLFLH Sbjct: 61 EASPIAGFLEKNPAGGIHHICYEVDDILAARDRLKAEGARVLGSGEPKIGAHGKPVLFLH 120 Query: 121 PKDFNGCLVELEQV 134 PKDFNGCLVELEQV Sbjct: 121 PKDFNGCLVELEQV 134 Lambda K H 0.319 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 178 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 134 Length of database: 134 Length adjustment: 15 Effective length of query: 119 Effective length of database: 119 Effective search space: 14161 Effective search space used: 14161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate GFF2418 PGA1_c24490 (methylmalonyl-CoA epimerase)
to HMM TIGR03081 (mce: methylmalonyl-CoA epimerase (EC 5.1.99.1))
../bin/blast/fastacmd -i /tmp/list.8789.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8789.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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