Align 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) (characterized)
to candidate GFF3380 PGA1_c34330 2-amino-3-ketobutyrate coenzyme A ligase Kbl
Query= reanno::Phaeo:GFF3380 (395 letters) >FitnessBrowser__Phaeo:GFF3380 Length = 395 Score = 786 bits (2030), Expect = 0.0 Identities = 395/395 (100%), Positives = 395/395 (100%) Query: 1 MSTDFLTDISKTLEEIKADGLYKRERMITSPQGGEIRVGDAAVINLCANNYLGLADHPDL 60 MSTDFLTDISKTLEEIKADGLYKRERMITSPQGGEIRVGDAAVINLCANNYLGLADHPDL Sbjct: 1 MSTDFLTDISKTLEEIKADGLYKRERMITSPQGGEIRVGDAAVINLCANNYLGLADHPDL 60 Query: 61 IAAARGVMDDKGFGMASVRFICGTQDIHRELEQRLAKFLGKDDAILFAACFDANGGLFEP 120 IAAARGVMDDKGFGMASVRFICGTQDIHRELEQRLAKFLGKDDAILFAACFDANGGLFEP Sbjct: 61 IAAARGVMDDKGFGMASVRFICGTQDIHRELEQRLAKFLGKDDAILFAACFDANGGLFEP 120 Query: 121 LLGPEDAIISDSLNHASIIDGIRLCKAKRYRYLNSDMNDLEAWLKQAREDGARHIMIATD 180 LLGPEDAIISDSLNHASIIDGIRLCKAKRYRYLNSDMNDLEAWLKQAREDGARHIMIATD Sbjct: 121 LLGPEDAIISDSLNHASIIDGIRLCKAKRYRYLNSDMNDLEAWLKQAREDGARHIMIATD 180 Query: 181 GVFSMDGYLAKLPEIRALADKYDAIVMVDDCHATGFMGATGAGTPEHFGVDVDIVTGTLG 240 GVFSMDGYLAKLPEIRALADKYDAIVMVDDCHATGFMGATGAGTPEHFGVDVDIVTGTLG Sbjct: 181 GVFSMDGYLAKLPEIRALADKYDAIVMVDDCHATGFMGATGAGTPEHFGVDVDIVTGTLG 240 Query: 241 KALGGAIGGYIAGPQPVIDLLRQRARPYLFSNSLPPSIVAAGLEAIRLVEEGNGLRAQLF 300 KALGGAIGGYIAGPQPVIDLLRQRARPYLFSNSLPPSIVAAGLEAIRLVEEGNGLRAQLF Sbjct: 241 KALGGAIGGYIAGPQPVIDLLRQRARPYLFSNSLPPSIVAAGLEAIRLVEEGNGLRAQLF 300 Query: 301 ENAKYWRAGLEKLGFDLLPGEHPIIPVMLGEAQLAQDMASRLFDEGVYVSGFFFPVVPRG 360 ENAKYWRAGLEKLGFDLLPGEHPIIPVMLGEAQLAQDMASRLFDEGVYVSGFFFPVVPRG Sbjct: 301 ENAKYWRAGLEKLGFDLLPGEHPIIPVMLGEAQLAQDMASRLFDEGVYVSGFFFPVVPRG 360 Query: 361 QARIRTQMNAALTRDELDRALAAFGKVGKELGILS 395 QARIRTQMNAALTRDELDRALAAFGKVGKELGILS Sbjct: 361 QARIRTQMNAALTRDELDRALAAFGKVGKELGILS 395 Lambda K H 0.322 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 684 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 395 Length of database: 395 Length adjustment: 31 Effective length of query: 364 Effective length of database: 364 Effective search space: 132496 Effective search space used: 132496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.9 bits)
Align candidate GFF3380 PGA1_c34330 (2-amino-3-ketobutyrate coenzyme A ligase Kbl)
to HMM TIGR01822 (kbl: glycine C-acetyltransferase (EC 2.3.1.29))
../bin/blast/fastacmd -i /tmp/list.3660.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3660.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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