Align Dihydrolipoyl dehydrogenase; EC 1.8.1.4; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes (uncharacterized)
to candidate GFF3862 PGA1_78p00260 dihydrolipoyl dehydrogenase LpdA
Query= curated2:P95596 (454 letters) >FitnessBrowser__Phaeo:GFF3862 Length = 460 Score = 492 bits (1266), Expect = e-143 Identities = 257/461 (55%), Positives = 337/461 (73%), Gaps = 8/461 (1%) Query: 1 MAEFDVIIIGGGPGGYVCAIRCAQLGLKTACVEGRGALGGTCLNVGCIPSKALLHATHEL 60 M+ +D+I+IGGGPGGYV AIR AQLGLK ACVEGRG LGGTCLNVGCIPSKA+L ++ + Sbjct: 1 MSLYDLIVIGGGPGGYVAAIRAAQLGLKVACVEGRGTLGGTCLNVGCIPSKAMLSSSGKY 60 Query: 61 HEV-HENFEKMGLMGAKVKVDWA-----KIDGN-TKGIEFLFKKNKVTYLRGWGSIPAPG 113 + H + + GA++ +D KI G+ TKGI FLF+KN V + GW SIPA G Sbjct: 61 ESLSHLAGHGIAIEGARLDLDAMMARKDKIVGDLTKGIAFLFQKNGVDLIEGWASIPAVG 120 Query: 114 QVKVGDEVHTAKNIVIATGSESSGLPGIEIDEQTVVTSTGALSLAKVPKSMVVIGAGVIG 173 +VKVGDE+H KNI+IATGSE + LPG+EIDE VV+STGAL+L +VPK +VV+GAGVIG Sbjct: 121 KVKVGDEIHETKNILIATGSEPTPLPGVEIDEGDVVSSTGALTLPEVPKHLVVVGAGVIG 180 Query: 174 LELGSVYARLGAEVTVVEYLDAITPGMDAEVAKGLQRILTRQGLKFVLGAAVQGVDKAKG 233 LELG V++RLGA+VTVVEYLD I PG+D E+AK QR L+++GLKF LG A++ +D++ Sbjct: 181 LELGQVWSRLGAKVTVVEYLDRILPGIDGEIAKLAQRALSKRGLKFQLGRALKFIDRSDE 240 Query: 234 KNTVRYTLRKDESAHAIEAEVVLVATGRKPFTKGLGLEALGVEMLPRGQVKADSHWATNV 293 T+ + + A+ VL+A GR+P +GLGLEALGV + RG V+ D ++T+V Sbjct: 241 GLTLTLDRVGKDKEEQLVADKVLIAIGRRPVIRGLGLEALGVSVNARGFVEVDERFSTSV 300 Query: 294 PGLYAIGDAIVGPMLAHKAEDEGMAVAEVIAGKHGHVNYDVIPGVIYTTPEVAAVGKTED 353 G+YAIGD + GPMLAHKAE++G+A E++AG+ GHV+Y+ +PG++YT PEVA+VGKTE+ Sbjct: 301 EGIYAIGDCVPGPMLAHKAEEDGVACVEMLAGQAGHVDYNTVPGIVYTDPEVASVGKTEE 360 Query: 354 ALKQEGRAYKVGKFSFMGNGRAKAVFQAEGFVKILADAATDRILGAHIIGPSAGDMIHEI 413 ALK G Y VGKF FM N RA+A + +G VK+LA +ILGAHI G GD+I E+ Sbjct: 361 ALKDAGTDYIVGKFIFMANSRARAQGETDGAVKVLA-TPEGQILGAHICGAHGGDLIAEL 419 Query: 414 CVAMEFGASAQDLALTCHAHPTYSEAVREAALACGDGAIHA 454 +AM GA+ ++A TCHAHP +EAV+EA L AIHA Sbjct: 420 VLAMTKGATVAEVAATCHAHPAMAEAVKEACLDAMGRAIHA 460 Lambda K H 0.318 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 783 Number of extensions: 30 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 454 Length of database: 460 Length adjustment: 33 Effective length of query: 421 Effective length of database: 427 Effective search space: 179767 Effective search space used: 179767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate GFF3862 PGA1_78p00260 (dihydrolipoyl dehydrogenase LpdA)
to HMM TIGR01350 (lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4))
../bin/blast/fastacmd -i /tmp/list.2862.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2862.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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