Align subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) (characterized)
to candidate GFF398 PGA1_c04090 beta-ketoadipyl-CoA thiolase PaaJ
Query= metacyc::MONOMER-3207 (400 letters) >FitnessBrowser__Phaeo:GFF398 Length = 400 Score = 533 bits (1374), Expect = e-156 Identities = 267/399 (66%), Positives = 314/399 (78%), Gaps = 1/399 (0%) Query: 3 DVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQAGE 62 D FICDA RTPIGR+GGAL+ +R DDLAA+P+ AL NP V W +D+V G ANQAGE Sbjct: 2 DAFICDATRTPIGRYGGALSQLRTDDLAALPIAALAARNPDVDWSSLDDVILGDANQAGE 61 Query: 63 DNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMSR 122 NRNVARMA LLAGLP ++PG T+NRLCASGMDA+G A R I +G+ ++AIAGGVESMSR Sbjct: 62 SNRNVARMAALLAGLPTTVPGTTINRLCASGMDAVGMASRGIKAGDYDMAIAGGVESMSR 121 Query: 123 APFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRADQD 182 APFVM KA S ++R + DTTIGWRF+N M YG DSMP+TADNVA+DY +SR DQD Sbjct: 122 APFVMPKATSAFTRANAVYDTTIGWRFVNKKMHEMYGTDSMPQTADNVAEDYGISREDQD 181 Query: 183 AFALRSQQKAAAAQAAGFFAEEIVPVRIAHKKG-ETIVERDEHLRPETTLEALTKLKPVN 241 AFA RSQ + AAA AG F +EI PV I +KG + +V+ DEH RP T+ E L LK VN Sbjct: 182 AFAARSQARWAAAHEAGIFNDEITPVTIPQRKGDDLVVDTDEHPRPGTSAEKLAGLKGVN 241 Query: 242 GPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGPVPA 301 GPDK+VTAGNASGVNDGAAA+++A+ A K+GL P AR++GM + GV PR+MGIGPVPA Sbjct: 242 GPDKSVTAGNASGVNDGAAAILMANEAAAAKNGLKPMARIVGMTAAGVEPRIMGIGPVPA 301 Query: 302 VRKLTERLGVAVSDFDVIELNEAFASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGMS 361 RK+ R G+ + DVIELNEAFASQGLA LRELGVADDAP VNPNGGAIALGHPLGMS Sbjct: 302 TRKVLARTGLTIDQMDVIELNEAFASQGLATLRELGVADDAPHVNPNGGAIALGHPLGMS 361 Query: 362 GARLVLTALHQLEKSGGRKGLATMCVGVGQGLALAIERV 400 GARLVLTA +QL+++GGR L TMCVGVGQG AL +ERV Sbjct: 362 GARLVLTAAYQLQRTGGRYALCTMCVGVGQGTALILERV 400 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 541 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 400 Length of database: 400 Length adjustment: 31 Effective length of query: 369 Effective length of database: 369 Effective search space: 136161 Effective search space used: 136161 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.9 bits)
Align candidate GFF398 PGA1_c04090 (beta-ketoadipyl-CoA thiolase PaaJ)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))
../bin/blast/fastacmd -i /tmp/list.3229.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3229.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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